CN191732

Overview
NameCN191732
Unique NameCN191732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_HALLT (Shikimate dehydrogenase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=aroE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.315e-17
Identity = 74/221 (33.48%), Postives = 100/221 (45.25%), Query Frame = -2
Query:  190 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI----IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKE 840
            AG + T+P K+ A+   D    +A+ IGAVN +    +R     +  G+NTD  G   A                  LAG+  VV+                 A V +ANRT +RA +LA+ V G      D          +L N TS+GM  + + TP+P   L     V DAVY P  TRLLREA  +GAT + G  M + Q  E +E +TG  AP E
Sbjct:   56 AGLNVTVPFKQDALDAVDPAP-LAERIGAVNTVDFGPLRAGDADRPRGHNTDAAGVKRAFSHH-----------DIELAGRDAVVVGAGGAGRAAAFALADAGATVHVANRTAERAVDLADAVPGATGGGLDDLGDRIAGADVLVNATSVGMD-EPEATPVPADHLHGDLAVLDAVYAPIETRLLREAAAAGATTIDGAWMLLFQGVEAFEIWTGADAPVE 263          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_MAGSM (Shikimate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=aroE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17
Identity = 70/243 (28.81%), Postives = 110/243 (45.27%), Query Frame = -2
Query:  181 IAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHA------LSLADLENFNPEDGMILANTTSIGMQ----PKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQ 879
            + +  Q +++    GF+ TIPHKE  +     +   A  IGAVN ++    DGK+ G+NTD  G I+ +++  R  L+    +     G    ++                  RV+IANRT +RA+ L E +  +A      ++    +    E   +L NTTS+G++    P +D   +P     H+A V D VY    T LLR   +       GL M I Q  + +E +TG   P EL +
Sbjct:   54 LVRAVQGFAAMGMRGFNATIPHKENLLPLMHTLSEEASHIGAVNTVVI-DDDGKMTGHNTDAYGFITGLKEAWRSDLSGLTAIMLGSGGAARAILYGLIQAKAA---------RVIIANRTIERAQALIEAMQPYAPNTQLMVAPTQADQLPLESCDLLINTTSMGLKGETIPYIDLARLP-----HHAFVSDIVYGAHPTPLLRATAQHQLGGQDGLPMLIHQGAKAFELWTGHSMPVELVE 281          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_SHIF8 (Quinate/shikimate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=ydiB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   24 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTDTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 245          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_SHIBS (Quinate/shikimate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=ydiB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_SHIB3 (Quinate/shikimate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ydiB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_ECOUT (Quinate/shikimate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=ydiB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_ECOSM (Quinate/shikimate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ydiB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVHDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_ECOSE (Quinate/shikimate dehydrogenase OS=Escherichia coli (strain SE11) GN=ydiB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGISMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_ECOLU (Quinate/shikimate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ydiB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_ECOLI (Quinate/shikimate dehydrogenase OS=Escherichia coli (strain K12) GN=ydiB PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +E+ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
The following BLAST results are available for this feature:
BLAST of CN191732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
AROE_HALLT2.315e-1733.48Shikimate dehydrogenase OS=Halorubrum lacusprofund... [more]
AROE_MAGSM3.948e-1728.81Shikimate dehydrogenase OS=Magnetococcus sp. (stra... [more]
YDIB_SHIF86.735e-1729.17Quinate/shikimate dehydrogenase OS=Shigella flexne... [more]
YDIB_SHIBS6.735e-1729.17Quinate/shikimate dehydrogenase OS=Shigella boydii... [more]
YDIB_SHIB36.735e-1729.17Quinate/shikimate dehydrogenase OS=Shigella boydii... [more]
YDIB_ECOUT6.735e-1729.17Quinate/shikimate dehydrogenase OS=Escherichia col... [more]
YDIB_ECOSM6.735e-1729.17Quinate/shikimate dehydrogenase OS=Escherichia col... [more]
YDIB_ECOSE6.735e-1729.17Quinate/shikimate dehydrogenase OS=Escherichia col... [more]
YDIB_ECOLU6.735e-1729.17Quinate/shikimate dehydrogenase OS=Escherichia col... [more]
YDIB_ECOLI6.735e-1729.17Quinate/shikimate dehydrogenase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191732 ID=CN191732; Name=CN191732; organism=Citrus sinensis; type=EST; length=880bp
CTAAGAAATTTAGGATTTTATTTCCATACATAAANATTGAGGTACAAGTA
GACCTTTTATATTTTTGTCAGAAGAAAAAAATGAACAACGATGCTTCATG
TTGAATTACGCTAGAAAACAAAATCAGCAACATGTAATGGATTGACCAAA
CAGACCACACTAGTACTTTGCCATGATTTTCTGAAATAGTTCCTTCGGCG
CAGGCAATCCAGTGAATCTTTCATACTGTTCATATGCCTGTCCAATGAAC
ATCTCCAGCCCTGACACAATTGTGGCTCCAGATTCCTCTGCTTCTCTCAA
GAGTCTGGTAATTTTCGGGGTGTAAACAGCATCAAAGACCAGCGCATAAT
GTCCCAAAGCATGCTTCGGAATAGGTGTTTCATCAACTTTTGGCTGCATT
CCAATGGACGTTGTGTTTGCAAGAATCATGCCATCCTCCGGATTAAAATT
TTCCAGGTCGGCAAGAGATAAAGCATGTCCTCCTACAGTCTCTGCAAGTT
CTCTGGCTCGATCATAAGTGCGATTGGCAATCACAACCCTTGCTCCCTTT
GCTTTTGCACCATAAGCAAGTGCCTTGCCAGCACCACCAGCTCCAATGAC
CACAAATAACTTACCTGCTAATGCTGAGCTGACCCCACCACTGACATTAA
GTCTACCTCTTAGTCCATCCTCAATAGCAGAAATAGCACCAACATAGTCT
GTATTGTAACCAAATAACTTCCCATCACTTTGTCTTCTTATGATACAATT
AACAGCTCCTATTGACTTGGCAACTGTATCAACCTCATCACAACACTTCA
CTGCTGCCTCTTTGTGAGGAATTGTGCAACTGAATCCGGCAAAATCGTTG
GACGAATAAGTCTGGAAAAATTTTGCAATG
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