CN191731

Overview
NameCN191731
Unique NameCN191731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length235
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN191731_ssr24 microsatellite CN191731_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8502 contig Csv1_Contig8502:119..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK5_ARATH (Putative fructokinase-5 OS=Arabidopsis thaliana GN=At4g10260 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.774e-13
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            LIVSFGEMLIDFVP  SGVSLAE+ GFLKAPGGAPANVA A+ +
Sbjct:    6 LIVSFGEMLIDFVPDTSGVSLAESTGFLKAPGGAPANVACAITK 49
[Close]
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK2_ORYSJ (Fructokinase-2 OS=Oryza sativa subsp. japonica GN=FRK2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            L+VSFGEMLIDFVP V+GVSLAE+ GF+KAPGGAPANVA A+++
Sbjct:   18 LVVSFGEMLIDFVPDVAGVSLAESGGFVKAPGGAPANVACAISK 61
[Close]
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK2_ORYSI (Fructokinase-2 OS=Oryza sativa subsp. indica GN=FRK2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            L+VSFGEMLIDFVP V+GVSLAE+ GF+KAPGGAPANVA A+++
Sbjct:   18 LVVSFGEMLIDFVPDVAGVSLAESGGFVKAPGGAPANVACAISK 61
[Close]
BLAST of CN191731 vs. ExPASy Swiss-Prot
Match: SCRK2_MAIZE (Fructokinase-2 OS=Zea mays GN=FRK2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  102 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVAR 233
            L+VSFGEMLIDFVP V+G+SLAE+ GF+KAPGGAPANVA A+A+
Sbjct:   18 LVVSFGEMLIDFVPDVAGLSLAESGGFVKAPGGAPANVACAIAK 61
The following BLAST results are available for this feature:
BLAST of CN191731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SCRK5_ARATH2.774e-1381.82Putative fructokinase-5 OS=Arabidopsis thaliana GN... [more]
SCRK2_ORYSJ6.180e-1377.27Fructokinase-2 OS=Oryza sativa subsp. japonica GN=... [more]
SCRK2_ORYSI6.180e-1377.27Fructokinase-2 OS=Oryza sativa subsp. indica GN=FR... [more]
SCRK2_MAIZE6.180e-1377.27Fructokinase-2 OS=Zea mays GN=FRK2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191731 ID=CN191731; Name=CN191731; organism=Citrus sinensis; type=EST; length=235bp
GCACGAAGGTTTCTCTTCATAAACTCTCTCTCTATTCAATACACAACGTT
TCGATTTTTGTACAAATGGCTACAAACGGCGCCGTTTCATCCTCCTCAAG
CCTGATCGTGTCCTTCGGCGAGATGCTCATAGACTTCGTCCCGACGGTCT
CCGGCGTCTCCCTCGCCGAGGCCCCTGGATTCCTCAAGGCCCCCGGCGGC
GCCCCCGCCAACGTCGCCATAGCTGTAGCTCGCCT
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