CN191730

Overview
NameCN191730
Unique NameCN191730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: Y1861_PYRAE (Putative ankyrin repeat protein PAE1861 OS=Pyrobaculum aerophilum GN=PAE1861 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.653e-12
Identity = 42/123 (34.15%), Postives = 61/123 (49.59%), Query Frame = -1
Query:  130 ARDKGHIEVLAVLQRG--EAVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTA 492
            +R  G I +L+    G  EA+ TAAR          L +G        +G + LH+ A  G   +V LL+E+G D   +D  G  PLH+A E    + VE+LL  G + N +  +G TPL+ A
Sbjct:   78 SRKFGVIPLLSASAVGVEEALYTAARNGCHKAVRYMLARGVRPGA--SHGESLLHLVA--GDAGLVKLLLEYGVDPNARDAHGKTPLHMASEHNCAQCVELLLKRGPDVNVKDGAGRTPLHYA 196          

HSP 2 Score: 31.187 bits (69), Expect = 9.653e-12
Identity = 14/36 (38.89%), Postives = 22/36 (61.11%), Query Frame = -3
Query:  506 GKTALHKPAANGDRRMVEMLIEMEADPTIKDDRGRS 613
            G+T L+  A  GD   V++LI+  ADP  +D  G++
Sbjct:   35 GRTPLYYAAERGDVGTVDLLIKAGADPNARDREGKT 70          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: PSD10_MOUSE (26S proteasome non-ATPase regulatory subunit 10 OS=Mus musculus GN=Psmd10 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = -1
Query:   76 DKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGAS 387
            DK  +T   DQ   T LH A   GH  +V  L++ G  V  +D+ G +PLH+A   G  E V+ LL  GA+ NA +++G TPL+ A +     I+ +L+  GA+
Sbjct:   29 DKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: CTTB2_OTOGA (Cortactin-binding protein 2 OS=Otolemur garnettii GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 42/123 (34.15%), Postives = 64/123 (52.03%), Query Frame = -1
Query:   73 AVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASA 441
            A+ +AA+          L+  A  N  D+ G TPL  AA +GH   V LLI + A +    +EG  PL+LA + G+ E +++LL+ G N N +++ G TP++     G     +LLM   A A
Sbjct:  738 ALYSAAKNGHTDCVRLLLNAEAQVNAADKNGFTPLCAAAAQGHFECVELLIAYDAHINHAADEGQTPLYLACKNGNKECIKLLLEAGTNRNVKTRDGWTPVHAVVDTGDVDSLKLLMYHRAPA 860          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: CSKI1_RAT (Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = -1
Query:   67 ASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 378
            A+ +  D  G+ PLH AA +G K  + L+++ G+ V    +EGH PLHLA + G  +  E+LL + +N      SG TPL  A   G  G+ QLL++    A+L
Sbjct:   73 AAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNPCIVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAAL 176          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: CSKI1_MOUSE (Caskin-1 OS=Mus musculus GN=Caskin1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = -1
Query:   67 ASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 378
            A+ +  D  G+ PLH AA +G K  + L+++ G+ V    +EGH PLHLA + G  +  E+LL + +N      SG TPL  A   G  G+ QLL++    A+L
Sbjct:   73 AAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAAL 176          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: CSKI1_HUMAN (Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = -1
Query:   67 ASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 378
            A+ +  D  G+ PLH AA +G K  + L+++ G+ V    +EGH PLHLA + G  +  E+LL + +N      SG TPL  A   G  G+ QLL++    A+L
Sbjct:   73 AAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNIPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAAL 176          

HSP 2 Score: 50.8322 bits (120), Expect = 4.418e-11
Identity = 45/164 (27.44%), Postives = 73/164 (44.51%), Query Frame = -1
Query:   73 PSRMIV-AVRAFDVARDKGHIEVLAVLQRGEAVLTAARRXXXXXXXXXLDKGASTNYC--DQYGLTPLHVAAIKGHKHVVLLLIEFGADV--------ECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASA 531
            P ++++ A  A ++  D+GHI +    Q G   ++                   +N C  D  G TPL +A   G   VV LL+              +  D  G +PLHLA + G  + + +LL  G + N ++KSG T L+ A   G   + +LL++ G +A
Sbjct:   97 PMKLVLKAGSAVNIPSDEGHIPLHLAAQHGHYDVSEMLLQH------------QSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDATDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINRQTKSG-TALHEAALCGKTEVVRLLLDSGINA 247          

HSP 3 Score: 35.8094 bits (81), Expect = 4.418e-11
Identity = 15/35 (42.86%), Postives = 24/35 (68.57%), Query Frame = -3
Query:  512 DGKTALHKPAANGDRRMVEMLIEMEADPTIKDDRG 616
            DG +ALH  A NG+  ++ +L+E +A   IKD++G
Sbjct:   48 DGFSALHHAALNGNTELISLLLEAQAAVDIKDNKG 82          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: CTTB2_SHEEP (Cortactin-binding protein 2 OS=Ovis aries GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 55/196 (28.06%), Postives = 90/196 (45.92%), Query Frame = -1
Query:   73 KRHCISQQLTVTVGWWRC*SRWKPIL----PSRMIVAVRAFDVARDKGHIEVLAVLQRGE-------------AVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASA 609
            +R   S  L VT   W       P+L    P+ +         A  +G++ +L++L   E             A+ +AA+          L+  A  N  D+ G TPL  AA +GH   V LLI + A++    + G  PL+LA + G+ E +++LL+ G + + +++ G TP++ A   G     +LLM  GA A
Sbjct:  669 RRAGASDSLLVTASGWS--PSLTPLLMSGGPAPLAGRPTLLQQAAAQGNVTLLSMLLNEEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLNAEAQVNAADKNGFTPLCAAAAQGHFKCVELLIAYDANINHAADGGQTPLYLACKNGNKECIKLLLEAGTDRSVKTRDGWTPIHAAVDTGNVDSLKLLMYHGAPA 862          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: BCL3_MOUSE (B-cell lymphoma 3 protein homolog OS=Mus musculus GN=Bcl3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = -1
Query:   67 GLTPLHVAAIKGHKHVVLLLIEFGADVECQD-NEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 351
            GLT LHVA   G +  VLLL+E GAD++  D   G +PL  AVE  S   V++LL +GAN NA+  SG++ L++A   G   + + L+  GA + L
Sbjct:  229 GLTALHVAVNTGCQEAVLLLLERGADIDAVDIKSGRSPLIHAVENNSLNMVQLLLLHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSGL 324          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: POTEB_HUMAN (POTE ankyrin domain family member B OS=Homo sapiens GN=POTEB PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.592e-11
Identity = 36/106 (33.96%), Postives = 50/106 (47.17%), Query Frame = -1
Query:   70 DKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASAS 387
            + GA  N  D+YG T LH A     K +   L+ +GAD+E ++  G  PL L V     + V+ L+   AN NA  + G T L  A   G   I  LL+ +    S
Sbjct:  227 EHGADGNIQDEYGNTALHYAIYNEDKLMAKALLLYGADIESKNKCGLTPLLLGVHEQKQQVVKFLIKKKANLNALDRYGRTALILAVCCGSASIVNLLLEQNVDVS 332          

HSP 2 Score: 29.261 bits (64), Expect = 1.592e-11
Identity = 11/35 (31.43%), Postives = 23/35 (65.71%), Query Frame = -3
Query:  506 KTALHKPAANGDRRMVEMLIEMEADPTIKDDRGRS 610
            +TALH  +ANG+  +V++L++      + D++ R+
Sbjct:  174 RTALHLASANGNSEVVQLLLDRRCQLNVLDNKKRT 208          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: POTEH_HUMAN (POTE ankyrin domain family member H OS=Homo sapiens GN=POTEH PE=2 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 1.595e-11
Identity = 35/106 (33.02%), Postives = 49/106 (46.23%), Query Frame = -1
Query:   70 DKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASAS 387
            + G   N  D+YG T LH A     K +   L+ +GAD+E ++  G  PL L V     + V+ L+   AN NA  + G T L  A   G   I  LL+ +    S
Sbjct:  264 EHGTDPNIPDEYGNTALHYAIYNEDKLMAKALLLYGADIESKNKHGLTPLLLGVHEQKQQVVKFLIKKKANLNALDRYGRTALILAVCCGSASIVSLLLEQNIDVS 369          

HSP 2 Score: 29.261 bits (64), Expect = 1.595e-11
Identity = 12/35 (34.29%), Postives = 23/35 (65.71%), Query Frame = -3
Query:  506 KTALHKPAANGDRRMVEMLIEMEADPTIKDDRGRS 610
            +TALH  +ANG+  +V++L++      I D++ R+
Sbjct:  211 RTALHLASANGNSEVVKLLLDRRCQLNILDNKKRT 245          
The following BLAST results are available for this feature:
BLAST of CN191730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
Y1861_PYRAE9.653e-1234.15Putative ankyrin repeat protein PAE1861 OS=Pyrobac... [more]
PSD10_MOUSE1.025e-1137.5026S proteasome non-ATPase regulatory subunit 10 OS... [more]
CTTB2_OTOGA1.025e-1134.15Cortactin-binding protein 2 OS=Otolemur garnettii ... [more]
CSKI1_RAT1.025e-1137.50Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1[more]
CSKI1_MOUSE1.025e-1137.50Caskin-1 OS=Mus musculus GN=Caskin1 PE=1 SV=2[more]
CSKI1_HUMAN1.025e-1137.50Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1[more]
CTTB2_SHEEP1.339e-1128.06Cortactin-binding protein 2 OS=Ovis aries GN=CTTNB... [more]
BCL3_MOUSE1.339e-1142.71B-cell lymphoma 3 protein homolog OS=Mus musculus ... [more]
POTEB_HUMAN1.592e-1133.96POTE ankyrin domain family member B OS=Homo sapien... [more]
POTEH_HUMAN1.595e-1133.02POTE ankyrin domain family member H OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0005L12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191730 ID=CN191730; Name=CN191730; organism=Citrus sinensis; type=EST; length=618bp
AGTCTTAACTCAGATCTTATTAAATAATCAGTCTTCTAATACAGAAGCTA
GCATGGAAGATTGAGGAAGGGAAGCGGAGGCTCCCCTGTTCATTAGCAAC
TGTGAGATACCATCGTACCCCATAGCTTGAGCCGTATAAAGAGGAGTGGC
TCCACTCTTGCTTCTGGCATTAGCATTGGCTCCGTTGTCGAGCAACACCT
CCACCGTCTCTGTACTGCCGCCCTCCACGGCCAAATGCAGCGGCGCGTGG
CCTTCGTTGTCCTGACATTCCACGTCGGCTCCGAATTCGATTAAAAGCAA
CACTACATGCTTGTGCCCTTTGATTGCTGCTACGTGGAGGGGCGTCAGGC
CGTACTGATCACAGTAGTTCGTGCTGGCACCTTTATCAAGCAGCGACTCG
AGACCCTCCAATTCTCCTCGTCTTGCTGCCGTCAGCACCGCTTCTCCGCG
CTGTAAAACCGCCAAGACTTCAATATGTCCCTTGTCGCGAGCAACGTCAA
AAGCACGAACGGCCACGATCATCCTTGATGGTAGGATCGGCTTCCATCTC
GATCAACATCTCCACCATCCTACGGTCACCGTTAGCTGCTGGCTTATGCA
ATGCCGTTTTCCCATCTT
back to top