CN191730

Overview
NameCN191730
Unique NameCN191730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: MYPT1_DANRE (Protein phosphatase 1 regulatory subunit 12A OS=Danio rerio GN=ppp1r12a PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = -1
Query:   85 DKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNR 387
            D+GA  NY +  GLT LH A I  +  +V  L+E GA +   DNEG  PLH A   G  +  E L+  GA+    +  G TPL  A+    + + Q  +NR
Sbjct:   61 DRGADINYANVDGLTALHQACIDDNVDMVTFLVEHGACINQPDNEGWIPLHAAASCGYLDIAEYLISQGASVGVVNSEGETPLDIAEEEAMEELLQNEINR 161          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: MYPT1_CHICK (Protein phosphatase 1 regulatory subunit 12A OS=Gallus gallus GN=PPP1R12A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = -1
Query:   85 DKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNR 387
            ++GA  NY +  GLT LH A I  +  +V  L+E GA++   DNEG  PLH A   G  +  E L+  GA+  A +  G TPL  A+    + + Q  +NR
Sbjct:   61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: INVS_MOUSE (Inversin OS=Mus musculus GN=Invs PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = -1
Query:   67 GEAVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 447
            G A+  AA           LD  A  +  D    TPL  A   GH+ V+  LI+ GA V+  D +GH+ LH A  GG+ +  ++L++N  N N +  +G TPL  A   GY     +LM   A  ++
Sbjct:  358 GTALHAAALSGHVSTVKLLLDNDAQVDATDVMKHTPLFRACEMGHRDVIQTLIKGGARVDLVDQDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGGYINCMAVLMENNADPNI 484          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: INVS_HUMAN (Inversin OS=Homo sapiens GN=INVS PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = -1
Query:   67 GEAVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 447
            G A+  AA           L+  A  +  D    TPL  A   GHK V+  LI+ GA V+  D +GH+ LH A  GG+ +  ++L++N  N N +  +G TPL  A   GY     +LM   A  ++
Sbjct:  358 GTALHAAALSGHVSTVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQTLIKGGARVDLVDQDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGGYINCMAVLMENNADPNI 484          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: INVS_CANFA (Inversin OS=Canis familiaris GN=INVS PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = -1
Query:   67 GEAVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 447
            G A+  AA           L+  A  +  D    TPL  A   GHK V+  LI+ GA V+  D +GH+ LH A  GG+ +  ++L++N  N N +  +G TPL  A   GY     +LM   A  ++
Sbjct:  358 GTALHAAALSGHVSTVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQTLIKGGARVDLVDQDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGGYINCMAVLMENNADPNI 484          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: EM506_ARATH (Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 43/129 (33.33%), Postives = 63/129 (48.84%), Query Frame = -1
Query:  112 DVARDKGHIEVLAVLQRGEAVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYD 498
            DV +D       A++ + EAV++   R           KGA+ +  D+ G  P+H A   G    V LL ++  DV   DNEG  PLH+AV+  + +  ++LL NGA+   R+K G   L  A   G D
Sbjct:  180 DVDKDNQTALHKAIIGKKEAVISHLLR-----------KGANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVDVNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDLALCFGRD 297          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = -1
Query:   76 KGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGAS 384
            K A  N  D+ G   LH A  +GHK +V +L+++ A + CQDNEG   LH A      + VE+LL +GA+   R + G  P    +  G   +S LL    AS
Sbjct:  181 KAADVNMTDEEGRALLHWACDRGHKELVKVLLQYEAGINCQDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLP---EEVTGCKAVSLLLQRHRAS 280          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: TNKS1_HUMAN (Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 2.628e-11
Identity = 44/132 (33.33%), Postives = 58/132 (43.94%), Query Frame = -1
Query:   67 LQRGEAVLTAARRXXXXXXXXXLDKGASTNYCDQYGL--TPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASASL 456
            L RG+A L  A +         L    + N  D  G   TPLH+AA   +  V   L+E GADV  QD  G  PLH A   G  +   +L+      NA  K   TPL+ A   G   +  LL+  GA  ++
Sbjct:  800 LLRGDAALLDAAKKGCLARVQKLCTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGADVNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKGRTQLCALLLAHGADPTM 931          

HSP 2 Score: 28.1054 bits (61), Expect = 2.628e-11
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = -3
Query:  506 TALHKPAANGDRRMVEMLIEMEADPTIKDDRGRS 607
            T LH+ AA G   + ++L++  ADPT K+  G +
Sbjct:  752 TPLHEAAAKGKYEICKLLLKHGADPTKKNRDGNT 785          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: CTTB2_EULMM (Cortactin-binding protein 2 OS=Eulemur macaco macaco GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 41/123 (33.33%), Postives = 65/123 (52.85%), Query Frame = -1
Query:   73 AVLTAARRXXXXXXXXXLDKGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLMNRGASA 441
            A+ +AA+          L+  A  N  D+ G TPL  AA +GH   V LLI + A +    + G  PL+LA + G+ E +++LL+ G + + +++ G TP++ A   G     +LLM  GA A
Sbjct:  738 ALYSAAKNGHTDCVRLLLNAEAQVNAADKNGFTPLCAAAAQGHFECVELLIAYDAHINHAADGGQTPLYLACKNGNKECIKLLLEAGTDRSVKTRDGWTPVHAAVDTGNVDSLKLLMYHGAPA 860          
BLAST of CN191730 vs. ExPASy Swiss-Prot
Match: CSKI2_XENLA (Caskin-2 OS=Xenopus laevis GN=caskin2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = -1
Query:   91 KGASTNYCDQYGLTPLHVAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGSTETVEVLLDNGANANARSKSGATPLYTAQAMGYDGISQLLM 384
            K  + N+ D  G + LH AA+ G+  ++LLL+E  A V+ +D  G  PLH A   G  E V +LL   A+ NA S  G  PL+ A   G+  +S+ L+
Sbjct:   38 KRLNVNHQDADGFSALHHAALSGNSELLLLLLEMQASVDIKDGNGMRPLHYAAWQGQPEPVRLLLRASASVNAASHDGQIPLHLAAQYGHYEVSETLL 135          
The following BLAST results are available for this feature:
BLAST of CN191730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
MYPT1_DANRE2.284e-1137.62Protein phosphatase 1 regulatory subunit 12A OS=Da... [more]
MYPT1_CHICK2.284e-1137.62Protein phosphatase 1 regulatory subunit 12A OS=Ga... [more]
INVS_MOUSE2.284e-1133.07Inversin OS=Mus musculus GN=Invs PE=1 SV=2[more]
INVS_HUMAN2.284e-1133.07Inversin OS=Homo sapiens GN=INVS PE=1 SV=2[more]
INVS_CANFA2.284e-1133.07Inversin OS=Canis familiaris GN=INVS PE=1 SV=1[more]
EM506_ARATH2.284e-1133.33Ankyrin repeat domain-containing protein EMB506, c... [more]
ACBD6_MOUSE2.284e-1136.89Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]
TNKS1_HUMAN2.628e-1133.33Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2[more]
CTTB2_EULMM2.982e-1133.33Cortactin-binding protein 2 OS=Eulemur macaco maca... [more]
CSKI2_XENLA2.982e-1137.76Caskin-2 OS=Xenopus laevis GN=caskin2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191730 ID=CN191730; Name=CN191730; organism=Citrus sinensis; type=EST; length=618bp
AGTCTTAACTCAGATCTTATTAAATAATCAGTCTTCTAATACAGAAGCTA
GCATGGAAGATTGAGGAAGGGAAGCGGAGGCTCCCCTGTTCATTAGCAAC
TGTGAGATACCATCGTACCCCATAGCTTGAGCCGTATAAAGAGGAGTGGC
TCCACTCTTGCTTCTGGCATTAGCATTGGCTCCGTTGTCGAGCAACACCT
CCACCGTCTCTGTACTGCCGCCCTCCACGGCCAAATGCAGCGGCGCGTGG
CCTTCGTTGTCCTGACATTCCACGTCGGCTCCGAATTCGATTAAAAGCAA
CACTACATGCTTGTGCCCTTTGATTGCTGCTACGTGGAGGGGCGTCAGGC
CGTACTGATCACAGTAGTTCGTGCTGGCACCTTTATCAAGCAGCGACTCG
AGACCCTCCAATTCTCCTCGTCTTGCTGCCGTCAGCACCGCTTCTCCGCG
CTGTAAAACCGCCAAGACTTCAATATGTCCCTTGTCGCGAGCAACGTCAA
AAGCACGAACGGCCACGATCATCCTTGATGGTAGGATCGGCTTCCATCTC
GATCAACATCTCCACCATCCTACGGTCACCGTTAGCTGCTGGCTTATGCA
ATGCCGTTTTCCCATCTT
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