CX301576

Overview
NameCX301576
Unique NameCX301576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
PhyRootSw1cdna_library
Homology
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UDG_RICPR (UDP-glucose 6-dehydrogenase OS=Rickettsia prowazekii GN=udg PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17
Identity = 58/176 (32.95%), Postives = 93/176 (52.84%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQ-VRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASHYKFQVLSNPEFLAEGTAINDLLFPSRVLIG 667
            + I  +G+GYVG   ++ I +      VT +D  + +I+  N   LPIYE  L E ++  +    L F+       R  D IF++V TP+K  G      A++K       K+++   +D ++V KSTVP  +  ++   L A   + F V SNPEFL EG+A+ D L+P R+++G
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDDVKISKLNKKILPIYEAKLDEYLKHALESDRLKFTNIYSNEFRNFDAIFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYLKAKG-FSFNVASNPEFLREGSAVEDFLYPDRIVVG 168          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 59/189 (31.22%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQ-VRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASHYKFQVLSNPEFLAEGTAINDLLFPSRVLIG--GEQTPDGLRAI 700
            + I  +G+GYVG   ++ + +      VT +D  E +I+  N   LPIYE  L +   Q +  + L F++  +  ++  + +F++V TP+K +G      A++        KI+    +D ++V KSTVP  +  ++   L     + F V SNPEFL EG A+ D L+P R++IG   +++ D LR I
Sbjct:    1 MNITFIGSGYVG--LVSGVMMSYLGHNVTCLDNDEAKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASG-----EADLSYVYEAIDKISLHINKDCLIVIKSTVPPNSCNNIINYLKEKG-FSFNVASNPEFLREGNAVEDFLYPDRIVIGVNNKESEDILRKI 181          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: ALGD_PSESY (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 61/184 (33.15%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQ-VRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEV----ATEDKIVVEKSTVPVRTAESMKRVLAAASHYK----FQVLSNPEFLAEGTAINDLLFPSRVLIG 667
            ++I   G GYVG   +    L A   +V  VD+S  +I   N+   PI EPGL+E++++ +    L  +TD    IR  D+  + V TP+K  G        +   E   R+I  V    AT   IVV  + +P   A  +  +L   S  K    F V  NPEFL E TAI D   P   +IG
Sbjct:    1 MRISIFGLGYVGA--VCAGCLSARGHEVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGKLRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIG 177          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: ALGD_PSEAE (GDP-mannose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=algD PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 62/194 (31.96%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQVRGKN-LFFSTDIDTGIREADIIFVSVNTPTKTTG-IGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASHYK----FQVLSNPEFLAEGTAINDLLFPSRVLIG--GEQTPDGLRAI 700
            ++I   G GYVG   +    L A   +V  VD+S  +I   N    PI EPGL+ +++Q R    L  +TD    + ++D+ F+ V TP+K  G +  G    +  C      I E +    +VV  + +P      +  ++   S  K    F V +NPEFL E TAI D  FP   +IG   +QT D L  I
Sbjct:    1 MRISIFGLGYVGA--VCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETV--CREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEI 190          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: ALGD_PSESH (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. phaseolicola GN=algD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 61/184 (33.15%), Postives = 84/184 (45.65%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQ-VRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEV----ATEDKIVVEKSTVPVRTAESMKRVLAAASHYK----FQVLSNPEFLAEGTAINDLLFPSRVLIG 667
            ++I   G GYVG   +    L A    V  VD+S  +I   N+   PI EPGL+E++++ +    L  +TD    IR  D+  + V TP+K  G        +   E   R+I  V    AT   IVV  + +P   A  +  +L   S  K    F V  NPEFL E TAI D   P   +IG
Sbjct:    1 MRISIFGLGYVGA--VCAGCLSARGHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGKLRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIG 177          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: ALGD_PSESM (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato GN=algD PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 62/185 (33.51%), Postives = 84/185 (45.41%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQ--VRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTGIGAGRAANIKNCELCARKIAEVA----TEDKIVVEKSTVPVRTAESMKRVLAAASHYK----FQVLSNPEFLAEGTAINDLLFPSRVLIG 667
            ++I   G GYVG   +    L A    V  VD+S  +I   N+   PI EPGL+E++++    GK L  +TD    IR  D+  + V TP+K  G        +   E   R+I  V     T   IVV  + +P   A  +  +L   S  K    F V  NPEFL E TAI D   P   +IG
Sbjct:    1 MRISIFGLGYVGA--VCAGCLSARGHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGLATGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKNTRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIG 177          
BLAST of CX301576 vs. ExPASy Swiss-Prot
Match: ALGD_PSEPK (GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 57/188 (30.32%), Postives = 84/188 (44.68%), Query Frame = 2
Query:  143 LKICCMGAGYVGGPTMAVIALKAPRIKVTVVDLSEKQIAAWNSSSLPIYEPGLQEIVEQ-VRGKNLFFSTDIDTGIREADIIFVSVNTPTKTTG-IGAGRAANIKNCELCARKIAEVATEDKIVVEKSTVPVRTAESMKRVLAAASHYK----FQVLSNPEFLAEGTAINDLLFPSRVLIGGEQTPDG 688
            ++I   G GYVG   +    L A   +V  VD+S  +I   N    PI EPGL+ +++Q +    L  +TD    IR +D+  + V TP+K  G +G     ++  C      + +      IVV  + +P      +  +L   S  K    F V  NPEFL E TAI D   P   +IG   +  G
Sbjct:    1 MRISIFGLGYVGA--VCAGCLTARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGIANGRLRGTTDFAEAIRASDVSMICVGTPSKKNGDLGLEYIESV--CREIGYVLRDTTRRHTIVVRSTVLPGTVKNVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDQPPMTVIGELDSASG 184          
The following BLAST results are available for this feature:
BLAST of CX301576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UDG_RICPR6.615e-1732.95UDP-glucose 6-dehydrogenase OS=Rickettsia prowazek... [more]
UDG_RICBR2.514e-1631.22UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]
ALGD_PSESY5.795e-1333.15GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSEAE5.795e-1331.96GDP-mannose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
ALGD_PSESH9.885e-1333.15GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSESM4.906e-1233.51GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSEPK1.864e-1130.32GDP-mannose 6-dehydrogenase OS=Pseudomonas putida ... [more]

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Properties
Property NameValue
Genbank descriptionC08011C06SK PhyRootSw1 Citrus sinensis cDNA clone C08011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301576 ID=CX301576; Name=CX301576; organism=Citrus sinensis; type=EST; length=740bp
GAATTCGGCACGAGGCCAGAGCTTCTCACAAGCAATTTATATCACACAAT
ATCATCTCACAACCTCAGAGAAACACTTTCACCTCTCGTCTTCTATTTGA
ATTAAATAACCTTGAAAAGAAAAAATGTCACAAGAATGGGATTTAAAGAT
TTGCTGTATGGGTGCTGGTTATGTTGGTGGTCCAACCATGGCCGTTATTG
CATTAAAAGCACCAAGAATTAAAGTCACTGTTGTCGATCTCTCAGAAAAA
CAGATCGCTGCATGGAATTCCTCTTCCCTACCAATTTATGAACCAGGATT
ACAAGAAATTGTTGAACAAGTACGTGGTAAAAATTTATTTTTTTCCACAG
ATATTGATACTGGTATACGTGAAGCTGATATCATCTTCGTAAGTGTCAAT
ACCCCAACAAAGACCACTGGTATTGGTGCAGGACGTGCTGCGAATATTAA
AAATTGTGAATTATGTGCTAGAAAAATTGCTGAAGTTGCTACAGAAGATA
AAATTGTGGTTGAAAAGTCAACTGTCCCTGTACGTACAGCAGAATCCATG
AAACGTGTTCTTGCTGCTGCATCACATTATAAATTTCAAGTGTTAAGTAA
TCCAGAATTTTTAGCGGAAGGTACAGCTATCAATGATTTATTATTCCCAT
CACGCGTATTAATTGGTGGTGAACAAACGCCTGATGGTTTACGTGCCATT
GAAACTTTAGTCAGTGTTTATGCTAATTGGGTGCCACGTG
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