CN191689

Overview
NameCN191689
Unique NameCN191689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE-DYRKMVQKQY 677
            +M     G+SAFP+ +S +  W GTI G   T YEGL +K+S+ FP +YP+ PP + F +  +HPNVD  GNICLDIL+DKWS+ Y+ +TILLS+QSLLGEPN  SPLN+ AA L +    +Y++++ ++Y
Sbjct:   40 LMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRY 170
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 70/131 (53.44%), Postives = 92/131 (70.23%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFT-WIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQKQY 677
            ++S     +SAFP  ++  T W+G I G K T Y GL +K+SL FP +YPF PP +KF +  +HPNVD+ GNICLDIL++KWS+ Y+  TILLS+QSLLGEPN  SPLN+ AA L + + E+YRK V   Y
Sbjct:   20 LLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACY 150
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = -3 
Query:  297 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 656
            GVS  P  ++I TW   I G + T +E  ++KLSL F  +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL EPNP SP NS AA L   N+ +Y K VQ+
Sbjct:   23 GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQ 143
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = -3 
Query:  303 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 656
            GVS  P   +I  W   I G +GT +E  ++KL++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   23 GVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = -3 
Query:  303 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 656
            GVS  P   +I  W   I G +GT +E  ++KL++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   23 GVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = -3 
Query:  303 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 659
            +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   22 VGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = -3 
Query:  303 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 659
            +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   22 VGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = -3 
Query:  303 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 659
            +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   22 VGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = -3 
Query:  303 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 659
            +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   22 VGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = -3 
Query:  303 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 659
            +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   22 VGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141
The following BLAST results are available for this feature:
BLAST of CN191689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
UBC11_SCHPO5.610e-3350.38Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC11_YEAST2.132e-3253.44Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC1_CAEEL9.269e-2853.72Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE4.600e-2752.10Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN4.600e-2752.10Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2B_RAT1.338e-2651.67Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.338e-2651.67Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.338e-2651.67Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.338e-2651.67Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.338e-2651.67Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191689 ID=CN191689; Name=CN191689; organism=Citrus sinensis; type=EST; length=679bp
GAGGGAAAGAAGTCCCTTTCATTTGATTCGAACAAAATTACAACACCATG
TAAACTTTATTTTGCTATTACATGAGAAATTATCAAGAGCCTGAGTAACC
TTCCTTTGGGTATAATGTAAATAACTGTACTGACAATGATGAGACTTATG
TAGATCAGTTTTCATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCC
TTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATC
TGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTC
TGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATA
GCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAATAAACTTTGAATGG
ACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCACTTGTCCTGAAGG
ATGTCTAGGCATATGTTGCCATACTGATCAACATTTGGATGGAAGCACAT
AGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAAT
GCAAAGAAAGTTTGTATGATAAACCCTCATACATAGTTCCCTTTCCACCC
TCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCCGA
GACCCCAAGATCACCTCCACTCATCATAA
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