CN191689

Overview
NameCN191689
Unique NameCN191689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = -3
Query:  303 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMV 659
            +G+S  P+  +I  W   I G + T ++G ++KL+LHF  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   +L SIQSLL +PNP+SP N+ AA L + NK +Y + V
Sbjct:   22 VGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKV 141          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = -3
Query:  297 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 656
            G+S  P+  +I  W   I G   T ++G ++KLSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + NK +Y + V++
Sbjct:   23 GISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 143          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.133e-25
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = -3
Query:  297 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 656
            G+S  P+  +I  W   I G   T ++G ++KLSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + +K +Y + V++
Sbjct:   23 GISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = -3
Query:  300 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 656
            G+S  P+  +I  W   I G   T ++G ++KLSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + +K +Y + V+
Sbjct:   23 GISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = -3
Query:  297 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 656
            G+S  P   +I  W   I G   T ++G ++KL+L F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + NK +Y + V++
Sbjct:   23 GISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 143          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.306e-25
Identity = 59/120 (49.17%), Postives = 74/120 (61.67%), Query Frame = -3
Query:  300 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 656
            GVS  P   +I  W   I G   T +E  ++KL++ F  +YP KPP V+F +  FHPNV   G ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA L   N+ +Y K V+
Sbjct:   23 GVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVK 142          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25
Identity = 53/98 (54.08%), Postives = 67/98 (68.37%), Query Frame = -3
Query:  357 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 650
            SA P GE +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPN++  GNICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct:   22 SAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.137e-24
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = -3
Query:  357 SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 650
            SA P G+ +F W  TI G   + Y G  + LS+HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct:   22 SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.137e-24
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = -3
Query:  297 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 677
            M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:   16 MQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRE 143          
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.137e-24
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = -3
Query:  297 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 677
            M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:   16 MQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          
The following BLAST results are available for this feature:
BLAST of CN191689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
UBC3_ARATH1.748e-2648.33Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_MEDSA2.982e-2648.76Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.133e-2547.93Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH1.933e-2548.33Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_WHEAT2.524e-2547.93Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBCD6_DROME4.306e-2549.17Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC29_ARATH7.344e-2554.08Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC4_SCHPO2.137e-2453.06Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC2_EMENI2.137e-2445.31Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU2.137e-2445.31Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191689 ID=CN191689; Name=CN191689; organism=Citrus sinensis; type=EST; length=679bp
GAGGGAAAGAAGTCCCTTTCATTTGATTCGAACAAAATTACAACACCATG
TAAACTTTATTTTGCTATTACATGAGAAATTATCAAGAGCCTGAGTAACC
TTCCTTTGGGTATAATGTAAATAACTGTACTGACAATGATGAGACTTATG
TAGATCAGTTTTCATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCC
TTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATC
TGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTC
TGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATA
GCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAATAAACTTTGAATGG
ACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCACTTGTCCTGAAGG
ATGTCTAGGCATATGTTGCCATACTGATCAACATTTGGATGGAAGCACAT
AGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAAT
GCAAAGAAAGTTTGTATGATAAACCCTCATACATAGTTCCCTTTCCACCC
TCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCCGA
GACCCCAAGATCACCTCCACTCATCATAA
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