CN191687

Overview
NameCN191687
Unique NameCN191687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_ACIF2 (NADH-quinone oxidoreductase subunit B OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + +D VVN+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPR
Sbjct:   11 FVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB2_ACIF5 (NADH-quinone oxidoreductase subunit B 2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + +D VVN+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFGI+FRPSPR
Sbjct:   11 FVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB1_CHRVO (NADH-quinone oxidoreductase subunit B 1 OS=Chromobacterium violaceum GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV +  D ++NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPR
Sbjct:   11 FVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB1_ACIF5 (NADH-quinone oxidoreductase subunit B 1 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + +D VVN+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPR
Sbjct:   11 FVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  338 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPR
Sbjct:   57 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPR 115          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  338 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPR
Sbjct:   60 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPR 118          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_THIDA (NADH-quinone oxidoreductase subunit B OS=Thiobacillus denitrificans (strain ATCC 25259) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.987e-19
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV +K D ++NY+R GS+WPM+FGLACCAVEMM  GA+RYDLDRFGI+FRPSPR
Sbjct:   11 FVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMF (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.389e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPR
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMB (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup B GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.389e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPR
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMA (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup A GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.389e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPR
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPR 64          
The following BLAST results are available for this feature:
BLAST of CN191687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
NUOB_ACIF21.165e-1975.93NADH-quinone oxidoreductase subunit B OS=Acidithio... [more]
NUOB2_ACIF51.165e-1977.78NADH-quinone oxidoreductase subunit B 2 OS=Acidith... [more]
NUOB1_CHRVO1.165e-1974.07NADH-quinone oxidoreductase subunit B 1 OS=Chromob... [more]
NUOB1_ACIF51.165e-1975.93NADH-quinone oxidoreductase subunit B 1 OS=Acidith... [more]
NDUS7_PONAB1.165e-1966.10NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_BOVIN1.165e-1966.10NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_THIDA1.987e-1974.07NADH-quinone oxidoreductase subunit B OS=Thiobacil... [more]
NUOB_NEIMF3.389e-1974.07NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_NEIMB3.389e-1974.07NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_NEIMA3.389e-1974.07NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191687 ID=CN191687; Name=CN191687; organism=Citrus sinensis; type=EST; length=515bp
GCTAAATCCCAATACTACCGGAGAGAGTAACCACCACTTTCAAACCCCAA
CAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAACCA
AACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAA
AAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCC
TCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCG
CCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGG
AATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGC
TCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGAT
GCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCA
GGCCCAGCCCTCGCC
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