CN191687

Overview
NameCN191687
Unique NameCN191687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB1_AZOSB (NADH-quinone oxidoreductase subunit B 1 OS=Azoarcus sp. (strain BH72) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.862e-19
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + LD V+N+ R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPR
Sbjct:   11 FVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_NEIG1 (NADH-quinone oxidoreductase subunit B OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nuoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D V+N++R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPR
Sbjct:   11 FITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_JANMA (NADH-quinone oxidoreductase subunit B OS=Janthinobacterium sp. (strain Marseille) GN=nuoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPR
Sbjct:   11 FVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_DECAR (NADH-quinone oxidoreductase subunit B OS=Dechloromonas aromatica (strain RCB) GN=nuoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV +  D ++NY+R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPR
Sbjct:   11 FVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB2_NITMU (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + LD V+N+ R GS+WPM+FGLACCAVEMM  GA+RYDLDRFGI+FRPSPR
Sbjct:   11 FVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_CAEEL (Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Caenorhabditis elegans GN=W10D5.2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  338 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            S  AE+ +++LDDV+N  +RGSIWP++FGLACCAVEMMH  A RYD+DR+G++FR SPR
Sbjct:   43 SSKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPR 101          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_POLSJ (NADH-quinone oxidoreductase subunit B OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=nuoB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.682e-18
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPR
Sbjct:   11 FMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_THICR (NADH-quinone oxidoreductase subunit B OS=Thiomicrospira crunogena (strain XCL-2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.197e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  356 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            V +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFGIIFRPSPR
Sbjct:   12 VTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_HERAR (NADH-quinone oxidoreductase subunit B OS=Herminiimonas arsenicoxydans GN=nuoB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.197e-18
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPR
Sbjct:   11 FVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_FRATW (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.747e-18
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPR
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPR 63          
The following BLAST results are available for this feature:
BLAST of CN191687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
NUOB1_AZOSB9.862e-1970.37NADH-quinone oxidoreductase subunit B 1 OS=Azoarcu... [more]
NUOB_NEIG11.288e-1872.22NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_JANMA1.288e-1870.37NADH-quinone oxidoreductase subunit B OS=Janthinob... [more]
NUOB_DECAR1.288e-1868.52NADH-quinone oxidoreductase subunit B OS=Dechlorom... [more]
NUOB2_NITMU1.288e-1874.07NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NDUS7_CAEEL1.288e-1864.41Probable NADH dehydrogenase [ubiquinone] iron-sulf... [more]
NUOB_POLSJ1.682e-1870.37NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_THICR2.197e-1873.58NADH-quinone oxidoreductase subunit B OS=Thiomicro... [more]
NUOB_HERAR2.197e-1868.52NADH-quinone oxidoreductase subunit B OS=Herminiim... [more]
NUOB_FRATW3.747e-1868.52NADH-quinone oxidoreductase subunit B OS=Francisel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0005K06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191687 ID=CN191687; Name=CN191687; organism=Citrus sinensis; type=EST; length=515bp
GCTAAATCCCAATACTACCGGAGAGAGTAACCACCACTTTCAAACCCCAA
CAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAACCA
AACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAA
AAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCC
TCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCG
CCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGG
AATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGC
TCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGAT
GCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCA
GGCCCAGCCCTCGCC
back to top