CN191687

Overview
NameCN191687
Unique NameCN191687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_LEPCP (NADH-quinone oxidoreductase subunit B OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + +D ++N+ + GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPR
Sbjct:   11 FVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPL (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Lens) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPR
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPH (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPR
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPC (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Corby) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPR
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPA (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Paris) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPR
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_VESOH (NADH-quinone oxidoreductase subunit B OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV   LD V+N+ R GS+WPM+FGLACCAVEMM  G++RYDLDRFGI+FRP+PR
Sbjct:   11 FVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_RUTMC (NADH-quinone oxidoreductase subunit B OS=Ruthia magnifica subsp. Calyptogena magnifica GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + L++V+N+ R GS+WPM+FGLACCAVEMM  G++RYDLDRFGI+FRP+PR
Sbjct:   11 FVTTSLNNVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_BORPE (NADH-quinone oxidoreductase subunit B OS=Bordetella pertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPR
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_BORPD (NADH-quinone oxidoreductase subunit B OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoB PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPR
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_BORPA (NADH-quinone oxidoreductase subunit B OS=Bordetella parapertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPR
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPR 64          
The following BLAST results are available for this feature:
BLAST of CN191687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
NUOB_LEPCP4.894e-1866.67NADH-quinone oxidoreductase subunit B OS=Leptothri... [more]
NUOB_LEGPL4.894e-1872.22NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPH4.894e-1872.22NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPC4.894e-1872.22NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPA4.894e-1872.22NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_VESOH6.392e-1870.37NADH-quinone oxidoreductase subunit B OS=Vesicomyo... [more]
NUOB_RUTMC6.392e-1868.52NADH-quinone oxidoreductase subunit B OS=Ruthia ma... [more]
NUOB_BORPE6.392e-1870.37NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORPD6.392e-1870.37NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORPA6.392e-1870.37NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191687 ID=CN191687; Name=CN191687; organism=Citrus sinensis; type=EST; length=515bp
GCTAAATCCCAATACTACCGGAGAGAGTAACCACCACTTTCAAACCCCAA
CAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAACCA
AACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAA
AAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCC
TCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCG
CCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGG
AATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGC
TCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGAT
GCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCA
GGCCCAGCCCTCGCC
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