CN191679

Overview
NameCN191679
Unique NameCN191679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191679 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = -1
Query:  180 VGHMGVLIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKA------ITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 665
            +GH+ V IAKAMG HV  I+ ++ K  +++ +LGA++ ++S++  +M +   S D+I+ T+P  H + PY             G        L P V+ G         +  S I    E KEML FC E  +   +++IK D +N   ++L ++  +YR+V+D+  S
Sbjct:  259 LGHIAVKIAKAMGAHVVAITRTEWKFKDSVNNLGANESILSTNVWQMNQHKGSFDFILSTIPMAHDIVPYIELLKYKATICTVGE-------LFPTVINGMDLAQHPCFLQSSLIAGSDEIKEMLAFCSEHNIMPDVQIIKADKINDTRQKLLESKAKYRYVIDIRAS 419          
BLAST of CN191679 vs. ExPASy Swiss-Prot
Match: YJGB_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjgB OS=Escherichia coli (strain K12) GN=yjgB PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 42/157 (26.75%), Postives = 74/157 (47.13%), Query Frame = -1
Query:  195 VGHMGVLIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVV 665
            +GH+ + +  AMG  VT  SS+  K  E +  +GAD+ + S D   ++  A   D II+TV  +   +PY             G + TP+      ++ G ++++GS  G+  E ++++ F     V    E+  M  +N A + +     RYR V+
Sbjct:  180 LGHIAIKLLHAMGCEVTAFSSNPAKEQEVLA-MGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVL 335          
BLAST of CN191679 vs. ExPASy Swiss-Prot
Match: ADH6_YEAST (NADP-dependent alcohol dehydrogenase 6 OS=Saccharomyces cerevisiae GN=ADH6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 49/162 (30.25%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  195 VGHMGVLIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVS-SDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSF--IGSMKETKEMLEFCREKGVTSMIEVIKMDY--VNKAFERLEKNDVRYRFVV 665
            +G MG LI+KAMG    VIS S +KR +AM+ +GAD Y+ +  +    ++  D+ D I+    +   ++             +  +       +  +   G KA++ S+  +GS+KE  ++L+   EK +   +E + +    V++AFER+EK DVRYRF +
Sbjct:  191 IGSMGTLISKAMGAETYVISRSSRKREDAMK-MGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTL 351          
The following BLAST results are available for this feature:
BLAST of CN191679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
YL498_MIMIV4.916e-1830.36Probable zinc-type alcohol dehydrogenase-like prot... [more]
YJGB_ECOLI1.385e-1226.75Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADH6_YEAST4.031e-1230.25NADP-dependent alcohol dehydrogenase 6 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191679 ID=CN191679; Name=CN191679; organism=Citrus sinensis; type=EST; length=665bp
GAGGACTGTCAGTAAACACCTCAGCTTGTTTTTTTTTTTTTTTTAATTTA
TTAGGAGAAATTGTAAACACGGAAGCCATACATGGTTAGGCCAACGACAA
AAGCATAAAAACCAAACAAGGCACTCAAAAAACAAAACGAGTATCATGCC
AAAATTGAATTTCTCTACGGATCAAGTTTGCTTCCGGCAACGTCCACGAC
GAATCTGTACCTAACGTCGTTCTTTTCGAGTCTCTCGAATGCTTTGTTAA
CGTAATCCATCTTGATCACTTCAATCATGGAGGTGACTCCCTTCTCTCGG
CAGAATTCAAGCATTTCCTTTGTCTCCTTCATGCTCCCAATGAAGCTCCC
CGTGATTGCCTTTCTCCCAAGCATAACCATAGGGGTAAGAAACTGCATGG
GAGTGTTAATGACACCCGTCAAGATCAACTTTCCATCAAGCTTCAACAGC
GAAAGGTAAGGCTCCAGAGGGTGATTTGCGGGTACGGTATCAATGATATA
ATCAAGTGAGTCAGCGGCTTCTTGCATACGAGTTGCGTCGGAGCTGACAA
GGTACTGATCGGCACCAAGATGCTCCATAGCTTCCACTCTTTTCTTATCA
GAAGAGCTAATCACAGTAACATGGTGTCCCATCGCCTTAGCTATCAAAAC
CCCCATGTGGCCTAC
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