CN191625

Overview
NameCN191625
Unique NameCN191625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 9.713e-73
Identity = 130/163 (79.75%), Postives = 149/163 (91.41%), Query Frame = 2
Query:  194 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDD 682
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD
Sbjct:   59 EWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.403e-71
Identity = 129/161 (80.12%), Postives = 147/161 (91.30%), Query Frame = 2
Query:  200 VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDD 682
            +PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD
Sbjct:    1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 161          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.512e-70
Identity = 130/163 (79.75%), Postives = 144/163 (88.34%), Query Frame = 2
Query:  197 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            W PVTKLGRLV  G + ++ +IYL SLPIKEYQIID  +   LKDEVMKI+PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKC+KEVATAI GAI+ AKLSVIPVRRGYWGNK+G PHTVP KVTGKCGSV VR+VPAPRG GIVAARVPKK+LQ+AG+DDV
Sbjct:   49 WTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDV 209          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.988e-69
Identity = 123/163 (75.46%), Postives = 148/163 (90.80%), Query Frame = 2
Query:  194 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDD 682
            +WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D  +  +L DEVMK++PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVR+VPAPRGAG+VAA V K+ LQ AGI+D
Sbjct:   33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIED 194          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.203e-68
Identity = 125/163 (76.69%), Postives = 143/163 (87.73%), Query Frame = 2
Query:  194 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDD 682
            +W PVTKLGRLV+E KI +LE+IYL+SLPIKE++IID L  + LKDEV+KI PVQKQT AGQRTRFKAFV +GD  GHVGLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VR++PAPRG GIV+A VPKK+L  AGI+D
Sbjct:   56 EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSN-LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIED 217          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.832e-64
Identity = 116/165 (70.30%), Postives = 140/165 (84.85%), Query Frame = 2
Query:  194 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH-KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +WVP TKLGRLV+  K+ SLE+I+L S+PIKE+QI+DTLI   KL DE+MKI PVQK T AGQRTRFKAF VVGD DGH+G+G +  KEV+ AIR ++I AKL+++PVRRGYWGNKIG PHT+P KVTGKCGSV VR+VPAPRG GIVAA VPKK+L+FAG++DV
Sbjct:   44 EWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDV 208          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 3.132e-63
Identity = 116/163 (71.17%), Postives = 142/163 (87.12%), Query Frame = 2
Query:  197 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            WVPVTKLGRLV+ GKI ++E+I+LHSLP+KE+QIIDTL+   L+DEVM I PVQKQTRAGQRTRFKA VVVGD++GHVGLG+K +KEVA AIR  II+AKLSVIP+RRGYWG  +G+PH++  K TGKCGSVTVR++PAPRG+GIVA+   KK+LQ AG++DV
Sbjct:   35 WVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG-LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDV 196          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.768e-38
Identity = 79/166 (47.59%), Postives = 117/166 (70.48%), Query Frame = 2
Query:  194 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +W P TKLGR+V+EG+I+++++++     I E +I+D L+   L++EV+ +  VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I VRRG   W    GRPH++P ++TGKCGSV + + PAPRG G+VA    +KVL+ AGI+DV
Sbjct:    9 EWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLLPD-LEEEVLDVNMVQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDV 173          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.855e-37
Identity = 78/166 (46.99%), Postives = 118/166 (71.08%), Query Frame = 2
Query:  194 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +W P T LGRLV EGKI+S+++++  ++PI+E +IIDTL+   LK EV+ +  VQ+QT +G+ ++++  V VG+ DG+VG+G+  S+++  AI  A   AKL+++PVRRG   W    G PH++P KV GK GSV + ++PAP+G G+VA+ V K VL+ AGI DV
Sbjct:    4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLLPG-LKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFKVEGKAGSVKIELIPAPKGVGLVASDVAKTVLRLAGIKDV 168          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36
Identity = 81/165 (49.09%), Postives = 115/165 (69.70%), Query Frame = 2
Query:  197 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            W P T+LGRLV+EGKIR++++I+ ++  IKE +I+D L+   LK E++ I  VQ+QT AG+R++F+  V VG+ DG+VG+G+  +K+V  AI  A+  AKL++ PVRR  G W      PH+VP  V GK GSV V ++PAP+G G+VA  V K VL+ AGI DV
Sbjct:    9 WEPRTELGRLVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQEILNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDV 172          
The following BLAST results are available for this feature:
BLAST of CN191625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
RS2_BOVIN9.713e-7379.7540S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]
RS2_CRIGR1.403e-7180.1240S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_DICDI4.512e-7079.7540S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_SCHPO4.988e-6975.4640S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_CAEEL7.203e-6876.6940S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_LEIAM4.832e-6470.3040S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS2_YEAST3.132e-6371.1740S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS5_METKA7.768e-3847.5930S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_THEPD3.855e-3746.9930S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_PYRIL1.465e-3649.0930S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005I13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191625 ID=CN191625; Name=CN191625; organism=Citrus sinensis; type=EST; length=685bp
GAGGGTCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCA
AACCCTAAACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGC
GGTGCATTCGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGG
CCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGG
TCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGC
CTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCAT
CGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGC
CGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTC
GTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTC
CAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGT
CGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCA
CACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAG
GATGGTTCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAA
AGAAGGTGCTGCAGTTTGCTGGTATTGACGATGTT
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