CN191625

Overview
NameCN191625
Unique NameCN191625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  320 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+
Sbjct:   10 ELEERVVAINRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLMEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDI 123          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_FUSNN (30S ribosomal protein S5 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 37/123 (30.08%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  317 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            ++ +++++KI  V K T+ G+   F     VGD +G +GLG+  +  V  AIR AI  AK +++ +          + +T+P ++ GK G+ T+ M PA  G G++A    +++L+  G+ D+
Sbjct:    7 NQYQEKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIVKISL--------KNNTIPHEIAGKWGATTLWMAPAYEGTGVIAGSASREILELVGVHDI 121          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_BACLD (30S ribosomal protein S5 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 2
Query:  320 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +L++ ++ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL+ AG+ D+
Sbjct:   12 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVSDI 125          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_ANOFW (30S ribosomal protein S5 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  320 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLITV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDI 123          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_LYSSC (30S ribosomal protein S5 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  320 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK +++ V R      +G   T P  V G+ G+  + + PA  G G++A    + VL+ AGI D+
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFTALVVVGDRNGHVGFGTGKAQEVPDAIRKAVEDAKKNLVEVPR------VG--GTTPHLVLGRFGAGEILIKPAAPGTGVIAGGPVRAVLELAGITDI 124          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_LACC3 (30S ribosomal protein S5 OS=Lactobacillus casei (strain ATCC 334) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  323 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            L+D+V+ I  V K  + G+R RF A  +VGD +GHVG     ++EV  AIR A+  AK S+I V        +G   T+P +V G  G+  V + PA  G+G+ A    + V++ AGI D+
Sbjct:   12 LEDQVVSINRVTKVVKGGRRLRFAAIAIVGDKNGHVGFATGKAQEVPEAIRKAVDAAKKSLIEV------PIVGT--TIPHEVIGHFGAGEVLLKPAEEGSGVAAGGAIRSVMELAGIADI 124          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_CLOAB (30S ribosomal protein S5 OS=Clostridium acetobutylicum GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  323 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V        +G   TVP ++ G+ G+  V ++PA  G G++A    + VL+ AG++DV
Sbjct:   10 LKEKVVFINRVAKVVKGGRNFRFTALVVVGDENGHVGVGTGKSAEIPEAIRKGIEDAKKNLVEVA------IVGT--TVPHEIYGEFGTGRVLIMPASEGTGVIAGGPVRAVLELAGLNDV 122          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_BACHK (30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  320 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDI 123          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_BACCZ (30S ribosomal protein S5 OS=Bacillus cereus (strain ZK / E33L) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  320 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDI 123          
BLAST of CN191625 vs. ExPASy Swiss-Prot
Match: RS5_BACCR (30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  320 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDV 685
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDI 124          
The following BLAST results are available for this feature:
BLAST of CN191625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
RS5_GEOTN2.276e-1338.5230S ribosomal protein S5 OS=Geobacillus thermodeni... [more]
RS5_FUSNN2.276e-1330.0830S ribosomal protein S5 OS=Fusobacterium nucleatu... [more]
RS5_BACLD2.276e-1335.2530S ribosomal protein S5 OS=Bacillus licheniformis... [more]
RS5_ANOFW2.276e-1338.5230S ribosomal protein S5 OS=Anoxybacillus flavithe... [more]
RS5_LYSSC2.972e-1338.5230S ribosomal protein S5 OS=Lysinibacillus sphaeri... [more]
RS5_LACC32.972e-1338.0230S ribosomal protein S5 OS=Lactobacillus casei (s... [more]
RS5_CLOAB2.972e-1338.8430S ribosomal protein S5 OS=Clostridium acetobutyl... [more]
RS5_BACHK2.972e-1338.5230S ribosomal protein S5 OS=Bacillus thuringiensis... [more]
RS5_BACCZ2.972e-1338.5230S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACCR2.972e-1338.5230S ribosomal protein S5 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005I13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191625 ID=CN191625; Name=CN191625; organism=Citrus sinensis; type=EST; length=685bp
GAGGGTCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCA
AACCCTAAACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGC
GGTGCATTCGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGG
CCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGG
TCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGC
CTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCAT
CGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGC
CGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTC
GTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTC
CAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGT
CGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCA
CACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAG
GATGGTTCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAA
AGAAGGTGCTGCAGTTTGCTGGTATTGACGATGTT
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