CN191610

Overview
NameCN191610
Unique NameCN191610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.166e-34
Identity = 68/144 (47.22%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  259 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 690
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.523e-34
Identity = 69/144 (47.92%), Postives = 96/144 (66.67%), Query Frame = -2
Query:  259 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 690
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KS++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.523e-34
Identity = 70/143 (48.95%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  262 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 690
            KRI+KE + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++ +  A AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.990e-34
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  274 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 705
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.394e-34
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = -2
Query:  259 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 690
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.394e-34
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = -2
Query:  259 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 690
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.394e-34
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = -2
Query:  259 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 690
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.394e-34
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = -2
Query:  259 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 690
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.789e-34
Identity = 69/146 (47.26%), Postives = 97/146 (66.44%), Query Frame = -2
Query:  262 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 693
            +KRI+KE++ ++ DP    +   V+E D+ H + T +GPP +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CN191610 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.789e-34
Identity = 69/149 (46.31%), Postives = 92/149 (61.74%), Query Frame = -2
Query:  274 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR-----SWT 705
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
The following BLAST results are available for this feature:
BLAST of CN191610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2N_MACFA1.166e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_RAT1.523e-3447.92Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DICDI1.523e-3448.95Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC2_WHEAT1.990e-3446.98Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBE2N_PONAB3.394e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE3.394e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN3.394e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN3.394e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC1_YEAST5.789e-3447.26Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC1_ARATH5.789e-3446.31Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005I05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191610 ID=CN191610; Name=CN191610; organism=Citrus sinensis; type=EST; length=856bp
AAATGGTGTCCGGGGCAAAAATAATTGAAAGTGATTTTTAGGACAACAAA
CTACATTTGAATGATTAGGAGTTTCAAACAATAAACATTCAACATTAACA
AAATCGTCTTGCCCTTGCAACTCCTCCCCAAACATCCTTCCTCATTACTA
AAATACAAAACATCCCCTTCCCGAAGCAAGATTGAAGAAAAAGGAGAAAA
AAACACAACATATTTCATATAAATGAGTTCCATTTCTGCAATATCCAAAC
AACTATCCCATGGCATACTTCTGTGTCCAGCTCCTGGCAGTGGCTTCATA
TTTGGCCTTGTCGGACTTGTACATGTGAGCAATCTCCGGTACAAGCGGGT
CGTCAGGATTTGGGTCAGTAAGCAACGAGCAGATAGAAAGCAGGACCTTT
GAAATGGTAAGAGCTGGGCTCCACTGTTCTTTAAGGATATCAAGACATAT
GCTTCCATTGCTGTTGATGTTTGGGTGGAAGACCTTGGTCCTAAAAGCAA
CCTTTGGGGGCTTGAAGGGATAATCTGGAGGAAAATGAATGGTAACCAAA
AATACACCTCCTGCATATGGACTATCAGGGGGGCCCATAATTGTTGCTTG
CCAATGGAACATGTCTTCAGCCACCGGACCAGCGCTGCAAGACGTGGGAG
GATCCTTCTGCAAATCCTTGAGTTCCTTCAAAATACGCTTCGAAGCCATG
ATGCTTCAACGGATTATTAAAAGTTAAAGCCACAACAAACCTAGGATCTG
CAACACTTGTGCGGCGAAGAAGGAGATCGGAGGGCAATAGCAGTGAGAAA
GGGGAACGGCTTCGGAGCAGATCTGCGGCGGCTACTGGCCGTCCCGACCT
CTCTCC
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