DY257380

Overview
NameDY257380
Unique NameDY257380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_PICGU (Probable proteasome subunit beta type-2 OS=Pichia guilliermondii GN=PRO2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.944e-27
Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  127 EEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETG-PSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGAR 597
            ++K   L+SH L+  SGE GD VQF E+IQ N  LY  R N   L+  A A+F R +LAT++R+   +  N+LLAGY+  TG PSL +IDY+ T  ++   A GY  ++  S++D+H+  GM+ E+ ++L+ KCI E+ +R+ +      IK+ DK+G +
Sbjct:   32 DDKTRQLNSHNLMAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNVLLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSLLDKHYKKGMNFEDGLDLLKKCIKELETRMPIDFKGCYIKVVDKEGIK 191          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_YEAST (Proteasome component C11 OS=Saccharomyces cerevisiae GN=PRE1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.908e-26
Identity = 60/163 (36.81%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  118 K*KEEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETG-PSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGARE 600
            K  ++K   L  H L+  +GE GD VQF E+IQ N+ LY  R    L+  A ++F R ELA ++R+   +  N+L+ GY+K+   P LY IDY+ T  ++  GA GY  +++ S++D H+   M+ EE ++L+  C+ E+  R+ +     ++KI DKDG R+
Sbjct:   29 KDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQ 191          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_DROME (Probable proteasome subunit beta type-2 OS=Drosophila melanogaster GN=Prosbeta4R2 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 6.138e-25
Identity = 60/159 (37.74%), Postives = 96/159 (60.38%), Query Frame = 1
Query:  127 EEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-NFFFLGNILLAGYEKETGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGARE 600
            + KI  L    ++   G+ GD +QFT+FI KN+ LY+  +G  L+  +AA+FTR  LA  +R N  +   +LLAGY+   GP L+YID       ++    G+GS F  S++ R+++S +S E+A +L+ KC+LEI+ RL++   NF + + D  G R+
Sbjct:   34 QSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWNSKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRK 192          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_TRYBB (Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.367e-24
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  127 EEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRNF--FFLGNILLAGYEKE--------TGPSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDG 591
            E+KI  LDSHK++  +GE G R  F E+++ N++L + R +G  ++T A A+F R  LA ALR+    +  N LLAG++          TG  LYY+DY+ TL +V  G  GYG+ F  +M+DR +   ++ +E V L+ KC  E+  R+VV+   F+ K   KDG
Sbjct:   33 EDKITELDSHKVVACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLDRMWRPNLTAQEGVELMQKCCDEVNKRVVVSNNTFICKAVPKDG 198          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_CRYNE (Probable proteasome subunit beta type-2 OS=Cryptococcus neoformans GN=CPR1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  127 EEKIMVLDSHKLIDASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNFF-FLGNILLAGYEKETG-PSLYYIDYIATLHKVDKGAFGYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVV 549
            E K+  L  H  +  SGEPGD   F E+I++N+ LY  RN  PL   AA+ + R  LA A+R+   +  N+LL G++  T  P LY+IDY+ T   V   A G G Y SLS MD+ ++  M  +E V+L+ KCI E   RL +
Sbjct:   32 ENKLKTLGPHLAMAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLLLGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLSTMDKWWYEDMDKKEGVDLLRKCIDETEKRLTI 174          
BLAST of DY257380 vs. ExPASy Swiss-Prot
Match: PSB2_CAEEL (Proteasome subunit beta type-2 OS=Caenorhabditis elegans GN=pbs-4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  175 GEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRNF-FFLGNILLAGYE-KETGPSLYYIDYIATLHKVDKGAF-GYGSYFSLSMMDRHFHSGMSVEEAVNLVDKCILEIRSRLVVAPPNFVIKIDDKDGARE 600
            GE GD  QF ++ ++N+ LY  RNG  ++ + A +F R  +A  LR+   +  ++L+ GY+ KE    L  +DY+A         F G+   F  ++MDR +   M+  E + L++KCI E + R V   P + + I DK G R+
Sbjct:   49 GEEGDVAQFGDWTKRNLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYLANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKVVIIDKKGYRK 193          
The following BLAST results are available for this feature:
BLAST of DY257380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSB2_PICGU2.944e-2740.63Probable proteasome subunit beta type-2 OS=Pichia ... [more]
PSB2_YEAST1.908e-2636.81Proteasome component C11 OS=Saccharomyces cerevisi... [more]
PSB2_DROME6.138e-2537.74Probable proteasome subunit beta type-2 OS=Drosoph... [more]
PSB2_TRYBB1.367e-2439.16Proteasome subunit beta type-2 OS=Trypanosoma bruc... [more]
PSB2_CRYNE1.415e-2141.26Probable proteasome subunit beta type-2 OS=Cryptoc... [more]
PSB2_CAEEL2.419e-1333.10Proteasome subunit beta type-2 OS=Caenorhabditis e... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BB10FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257380 ID=DY257380; Name=DY257380; organism=Citrus sinensis; type=EST; length=828bp
CTTTATGCTGATCTTTTAATGGATGAATTGGGACAGTTATGATGATGGGA
ATTTGGTACATACAGGATTGTTATATATTAGAAATACACTCTTGATTTGA
TTTAAACTTGGGATAATAAATAGAAAGAGGAGAAGATCATGGTCCTCGAC
TCTCACAAACTCATCGACGCCAGTGGAGAACCCGGTGACCGTGTTCAATT
TACGGAGTTCATTCAAAAGAATGTGTCGTTGTATCAATTTCGTAACGGAA
TTCCATTGACTACTGCTGCGGCGGCGAACTTTACCCGAGGAGAGCTTGCT
ACTGCTCTGAGAAATTTTTTTTTTTTGGGTAACATCCTTCTAGCTGGGTA
TGAGAAGGAGACAGGACCATCTCTTTACTACATTGACTACATTGCAACCC
TTCACAAAGTTGATAAGGGAGCTTTTGGTTATGGATCCTATTTTTCGCTC
TCCATGATGGACCGACATTTCCACAGTGGCATGTCAGTTGAAGAAGCTGT
AAACTTGGTTGATAAGTGCATACTGGAGATTCGATCCAGGCTGGTGGTGG
CACCACCAAACTTTGTCATCAAGATTGACGATAAAGATGGAGCACGGGAG
TATGCTTGGCGTGAATCTGTCAAGGACACCCCCTGTTTCTTCAGCATGAG
GGGGTCTGAATCTGAATCGGACTAATTGGTATAAAGTTATTATTTGACGG
CTAAAAACTGTTTTGGTTTGGATTTTTTCTTATGTTTAAATAAGTTCATA
AGTAAAAAAAATTTTAAACTTCCTTATCTGGCATTTAAATCTGGAAATCA
TTAAAATTGTTCGTGAGGTGATTGGTTT
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