DY257357

Overview
NameDY257357
Unique NameDY257357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: Y4AC_RHISN (Putative phytoene synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00440 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.025e-22
Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = 1
Query:    1 FYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDMLDAGLSDTVTKFPVDIQPFRDMIEGMRMD-LRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALA--LGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDD 537
            FYLG   + P +R AI+ IY +CR+ D++ D          AL +W   ++ L++  P   L   L+ +VT F +  + F  +++GM MD L+  R      L LYC  VA  VG MSV V G++ +           ALA  LG A QLTNILRD+ EDA  GR+Y+P++ L  AG++  D
Sbjct:   20 FYLGMRTLPPVQREAIFQIYSFCRQVDDIADSDEPREHRLAALQQWRDHIDALYQCVPPPRLKDYLA-SVTTFGLKREDFLAVVDGMEMDVLQDIRAPKMATLDLYCDRVASAVGRMSVRVFGLSEED--------GIALAHHLGRALQLTNILRDIDEDAGLGRLYIPRESLDHAGITSSD 192          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTB_RHOCA (Phytoene synthase OS=Rhodobacter capsulatus GN=crtB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.502e-21
Identity = 76/259 (29.34%), Postives = 122/259 (47.10%), Query Frame = 1
Query:    1 FYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM-LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIA-PDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAG-EVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKI 768
            F+  + ++    R    A+Y +CR  D+ VD   A      A+ +   RLED++ GRP +   D   +  V +F +  +    ++EG   D     Y    ++  Y   VA  VG M   +M +  PD+ A        A  LG+A Q++NI RDVGEDA+ GR++LP D + + G+      A  + T   R   +  + RA   +  A  GV  L    R  + A+  +Y  I  E+    Y+N T+RA+ +K +K+
Sbjct:   21 FHAASRVLPARVRDPALALYAFCRVADDEVDEVGAPRDKAAAVLKLGDRLEDIYAGRPRNAPSDRAFAAVVEEFEMPRELPEALLEGFAWDAEGRWYHTLSDVQAYSARVAAAVGAMMCVLMRVRNPDALAR-------ACDLGLAMQMSNIARDVGEDARAGRLFLPTDWMVEEGIDPQAFLADPQPTKGIRRVTERLLNRADRLYWRAATGVRLLPFDCRPGIMAAGKIYAAIGAEVAKAKYDNITRRAHTTKGRKL 272          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAAN (Dehydrosqualene synthase OS=Staphylococcus aureus (strain N315) GN=crtM PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.521e-18
Identity = 68/252 (26.98%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    RVY  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAAM (Dehydrosqualene synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=crtM PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.521e-18
Identity = 68/252 (26.98%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    RVY  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAAW (Dehydrosqualene synthase OS=Staphylococcus aureus (strain MW2) GN=crtM PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 67/252 (26.59%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAAS (Dehydrosqualene synthase OS=Staphylococcus aureus (strain MSSA476) GN=crtM PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 67/252 (26.59%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAAE (Dehydrosqualene synthase OS=Staphylococcus aureus (strain Newman) GN=crtM PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 67/252 (26.59%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAAC (Dehydrosqualene synthase OS=Staphylococcus aureus (strain COL) GN=crtM PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 67/252 (26.59%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAA8 (Dehydrosqualene synthase OS=Staphylococcus aureus (strain NCTC 8325) GN=crtM PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 67/252 (26.59%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
BLAST of DY257357 vs. ExPASy Swiss-Prot
Match: CRTM_STAA3 (Dehydrosqualene synthase OS=Staphylococcus aureus (strain USA300) GN=crtM PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 67/252 (26.59%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   19 LMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDM---LDAGLSDTVTKFPVDIQPFRDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 765
            L+  ++R+A+WAIY  CR+ D+ +D            +  +S  +  +    F     +   L        +  Q F ++I+ +  D   + ++   EL+ YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:   28 LLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
The following BLAST results are available for this feature:
BLAST of DY257357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
Y4AC_RHISN3.025e-2237.91Putative phytoene synthase OS=Rhizobium sp. (strai... [more]
CRTB_RHOCA1.502e-2129.34Phytoene synthase OS=Rhodobacter capsulatus GN=crt... [more]
CRTM_STAAN4.521e-1826.98Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAM4.521e-1826.98Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAW5.905e-1826.59Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAS5.905e-1826.59Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAE5.905e-1826.59Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAC5.905e-1826.59Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAA85.905e-1826.59Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAA35.905e-1826.59Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AF06FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257357 ID=DY257357; Name=DY257357; organism=Citrus sinensis; type=EST; length=1034bp
TTTTACTTGGGAACTTTGCTGATGACCCCTGAAAGGCGAAGGGCTATATG
GGCTATATATGTGTGGTGTAGGAGGACAGATGAGCTCGTTGATGGGCCTA
ATGCTTCACACATAACTCCAACAGCTTTAGACAGGTGGGAGTCCAGGTTG
GAAGACCTTTTCCGGGGTCGTCCATTTGATATGCTTGATGCTGGATTATC
AGATACAGTAACCAAATTTCCTGTCGACATTCAGCCATTCAGAGATATGA
TAGAAGGAATGAGGATGGACCTTAGGAAGTCAAGATACAAAAACTTTGAT
GAATTATACTTGTATTGTTATTATGTTGCTGGGACCGTAGGGCTAATGAG
TGTTCCAGTTATGGGCATAGCACCTGACTCACAGGCAACAACAGAGAGCG
TCTACAATGCAGCATTGGCACTAGGGATTGCTAATCAGCTCACTAACATA
CTCAGAGATGTTGGAGAGGATGCCCAAAGAGGAAGGGTTTATCTACCACA
AGATGAGTTGGCACAGGCGGGGCTTTCAGATGATGACATATTTGCTGGAG
AAGTGACTAATAAATGGAGAAACTTCATGAAGAACCAAATTAAGAGGGCA
AGGATGTTCTTTGATATGGCTGAGAACGGTGTGACCGAGCTGAGTGAAGC
TAGTAGATGGCCGGTATGGGCTTCATTGCTGTTGTACCGGCAAATACTGG
ATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTG
AGTAAAGCCAAGAAGATAGCTGCACTACCCATTGCATATGCAAAATCCCT
CTTACGCCCGTCAAGAATATATACCAGTAAGGGCTTAAACTGAACCTTTA
ACATCCAAGTTTAGAAGCATATTTTAGTTGAAACGGATTCCAAGGGGAAA
CCAAAATGGAAAAATGATTGGCTTGGATATAAGGAATGGTTGGAATGCCG
CATGGTTTTGAATGGAAAATTTAAAAAAGGGAATCCAATTCCAAATCCCG
GGCCCGGGGCCCTTATTCTAATTTGGAAATTTCT
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