CX047311

Overview
NameCX047311
Unique NameCX047311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = -3
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH  P GFKKF+VHN +ELE+L+M NR YC EIAH VS +KRKEIVERA QL I +TN   RLRSQE+E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = -3
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH  P GFKKF+VHN +ELE+L+M NR YC EIAH VS +KRKEIVERA QL I +TN   RLRSQE+E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = -3
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH  P GFKKF+VHN +ELE+L+M NR YC EIAH VS +KRKEIVERA QL I +TN   RLRSQE+E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.456e-38
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = -3
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR   +K NWR+PKGID+RVRR+FKG  LMPNIGYGS+KKTRH  P GF+K +VHN KELE+LMM NR +CAEIAH  S +KRK IVERA QL I VT   ARLRSQE+E
Sbjct:   21 RHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGY S+KKT+H   +GF+KF+VHN KE E+L+M N++Y AEIAH+VS + RK IVERAAQL I VTN   RL S+E+E
Sbjct:   22 RHQSDRYVKIKWNWRKPRGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.143e-33
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = -3
Query:  197 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQ 529
            R QSDR + V   WR+PKGID+RVRR+F+G   MP+IGYGS+KKTRH  P+G K F+V N K++ELL+MHN+TY AEIAH+VS RKR EI+ RA QL + VTN  A++ ++
Sbjct:   20 RHQSDRFMRVDSAWRKPKGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.252e-31
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = -3
Query:  194 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQE 529
            R QSDR   V E+WR+P+GIDS VRR+F+G   MP IGYG++KKTR+  PNG K F+V N  ++ELL+MHN+TY AEIA +VS RKR EIVE+A  L + VTN  A++RSQE
Sbjct:   16 RHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  194 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQE 529
            R QSD    V E+WR+P+GIDS VRR+F+G   MP IGYG++KKTR+  PNG K F+V N  ++ELL+MHN+TY AEIA +VS RKR EIVE+A  L + VTN  A++RSQE
Sbjct:   16 RHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = -3
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSD    V  +WR+P+GID+RVRR+F G   MP+IG+GS K T+   P+GFK+FV+ N +ELE+L+M NR Y A I H VS + RK IVERAA+L+I VT   ARLRS+E E
Sbjct:   20 RFQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  206 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARL 529
            R  SDR   V ENWR+ KGIDS VRR+F+G    PNIGYGS+KKT+   P G+K ++V N K+L++L++H ++Y AEIA  VS RKR EIV +A +L + VTN   +L
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
The following BLAST results are available for this feature:
BLAST of CX047311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RL32_DROMD8.537e-3967.5460S ribosomal protein L32 OS=Drosophila madeirensi... [more]
RL32_DROGU8.537e-3967.5460S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF8.537e-3967.5460S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_APIME1.456e-3869.3060S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE7.479e-3563.16Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR9.143e-3359.4660S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32A_SCHPO2.252e-3159.8260S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32B_SCHPO1.118e-3058.9360S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32_DICDI1.784e-2856.1460S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_CANAL1.846e-2552.7860S ribosomal protein L32 OS=Candida albicans GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13D06-G12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047311 ID=CX047311; Name=CX047311; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTCGGCAATAATAATATTTTTATGAAATAAAAACT
ACTGTATTATCACTCATCCCAAAAAAAATAAAAAATCACAAACGGTCGTA
TCTTTGTAAGTCAAAATTTTCAAAATTTTGATAAAGCGTACAAAACAAGA
CTCACTACTACTAAAAAGAACAGATTGTTTAATCTCATTCATCTTCCTGG
CTTCTCAATCTAGCAAGCTTGTTAGTCACAACAATATCAAGTTGGGCAGC
TCGCTCCACAATCTCTTTCCTCTTCCTCGGGGAAACATCATGGGCAATTT
CAGCACAGTAGGTCCTGTTGTGCATCATCAACAATTCAAGCTCTTTCGTA
TTGTGCACCACAAATTTCTTGAAACCATTTGGAAAATAGTGGCGTGTCTT
CTTGTCCGAACCATAACCAATGTTGGGCATTAGAGTGCATCCCTTGAACT
TTCTTCGCACCCGGGAATCAATACCCTTTGGTCTGCGCCAATTTTCCTTG
ACGGAGATCTTGCGATCGCTCTGAGGCCTCTTGAACTTCTTCAGCCTCTT
CTTCACTATCTTCTTCGACAGTAACGGAACCGCCATCTTCCTTACCTTCT
TCCCAGTGATTTGAGCTAGGGTTCAGCTTGGCCGCGAGGCCTTTCAAAGG
GTTAGCTAAGCCT
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