CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.799e-30
Identity = 63/115 (54.78%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            E+A F H   KK  DF+ V++EI  +T  V G+++GIS VPI L ++SP V+ L+L+DLPG+TKVPVG+QPPDIE   +++ L++I  E ++ILAVT AN+D+ANSDA+KLAK+V
Sbjct:   79 EHAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN2_BOVIN (Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 64/115 (55.65%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   +K  DFE V++EI  +T  V G+++GIS VPI L I+SP V+ L+L+DLPG+TKVPVG+QP DIE   +++ L++I  E ++ILAVT AN+D+ANSDA+KLAK+V
Sbjct:   79 EYAEFLHCKSRKFTDFEEVRQEIEAETDRVTGTNKGISPVPINLRIYSPHVLNLTLIDLPGITKVPVGDQPQDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.396e-29
Identity = 63/115 (54.78%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DF+ V+ EI  +T  V G ++GIS VPI L ++SP V+ L+L+DLPG+TKVPVG+QPPDIE    ++ +++I  E+ +ILAVT AN D+ANSDA+KLAK+V
Sbjct:   79 EYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.396e-29
Identity = 73/173 (42.20%), Postives = 110/173 (63.58%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            G+ TRRPL L+L ++S    +K +   EEN                  K +  + E EE+  F H  +K   DF+ +++EI  +T  ++G+++G+S  PI L++FSP VV L+LVDLPG+TKVPVG+QP DIE    EL L++I   ++IILAVTAAN D+A S+A+K++++V
Sbjct:   56 GVVTRRPLILQLVHVSPEDKRKTT--GEENG-----------------KFQSWRVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREV 209          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 61/116 (52.59%), Postives = 87/116 (75.00%), Query Frame = 3
Query:  195 EEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +E+  F H P+   YDF  ++EEII+ T  + G ++GIS  PI L+I+SP VV L+LVDLPG+TKVPVG+QP DIE+    + + YI++++ II+AVT AN D+ANSDA++LAK+V
Sbjct:   80 QEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV 195          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 62/115 (53.91%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DF+ V+ EI  +T  V G ++GIS +PI L ++SP V+ L+L+DLPG+TKVPVG+QPPDIE    ++ +++I  E+ +ILAVT AN D+ANSDA+KLAK+V
Sbjct:   79 EYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN3_HUMAN (Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 63/115 (54.78%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DF+ V+ EI  +T  V G ++GIS +PI L ++SP V+ L+L+DLPG+TKVPVG+QPPDIE    E+ +++I  E+ +ILAVT AN D+ANSDA+KLAK+V
Sbjct:   79 EYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 73/173 (42.20%), Postives = 109/173 (63.01%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TRRPL L+L ++S    +K +       G++  VE+                  EE+  F H  +K   DF+ +++EI  +T  ++G+++G+S  PI L+IFSP VV L+LVDLPG+TKVPVG+QP DIE    EL L++I   ++IILAVTAAN D+A S+A+K++++V
Sbjct:   56 GIVTRRPLILQLVHVSQEDKRKTT-------GEENGVEA------------------EEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREV 203          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.544e-28
Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DFE V+ EI  +T  V G+++GIS VPI L ++SP V+ L+LVDLPG+TKVPVG+QPPDIE    ++ ++++ +E+ +ILAV+ AN D+ANSDA+K+AK+V
Sbjct:   79 EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN1_MOUSE (Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.544e-28
Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DFE V+ EI  +T  V G+++GIS VPI L ++SP V+ L+LVDLPG+TKVPVG+QPPDIE    ++ ++++ +E+ +ILAV+ AN D+ANSDA+K+AK+V
Sbjct:   79 EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV 193          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DYN2_HUMAN4.799e-3054.78Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2[more]
DYN2_BOVIN8.185e-3055.65Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1[more]
DYN3_RAT1.396e-2954.78Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DNM1L_MOUSE1.396e-2942.20Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
DYNA_DICDI1.823e-2952.59Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
DYN3_MOUSE1.823e-2953.91Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1[more]
DYN3_HUMAN1.823e-2954.78Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4[more]
DNM1L_HUMAN1.823e-2942.20Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DYN1_RAT1.544e-2853.91Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]
DYN1_MOUSE1.544e-2853.91Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
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