CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN1_HUMAN (Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.016e-28
Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DFE V+ EI  +T  V G+++GIS VPI L ++SP V+ L+LVDLPG+TKVPVG+QPPDIE    ++ ++++ +E+ +ILAV+ AN D+ANSDA+K+AK+V
Sbjct:   79 EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN1_BOVIN (Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.016e-28
Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DFE V+ EI  +T  V G+++GIS VPI L ++SP V+ L+LVDLPG+TKVPVG+QPPDIE    ++ ++++ +E+ +ILAV+ AN D+ANSDA+K+AK+V
Sbjct:   79 EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.001e-27
Identity = 58/115 (50.43%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EY  F H+  KK   F+ +++EI  +T  V GS++GIS +PI L ++SP V+ L+L+DLPG+TKV +G+QP DIE+  +++  ++IR+E  +ILAVT AN D+ANSDA+KLAK+V
Sbjct:   74 EYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEV 188          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.307e-27
Identity = 73/178 (41.01%), Postives = 104/178 (58.43%), Query Frame = 3
Query:    9 EFGTRG--ICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVF-GHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLA 533
            +F  RG  ICTRRPL L+L                        V++  S+   ++         EE+  F  H P ++IYDF  ++ EI  +T  V+G ++G+S +PI L+IFSP V+ +SLVDLPG+TKVPVG+QP DIE     + L YI+E   +ILAV+ AN D+ANSDA+++A
Sbjct:   67 DFLPRGNDICTRRPLRLQL------------------------VQTKPSSDGGSD---------EEWGEFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPVGDQPSDIEARIRTMILTYIKEPSCLILAVSPANTDLANSDALQIA 211          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H    +  DF+ V++EI  +T  V G ++GIS  PI L +FSP V+ L+L+DLPG+TKVPVG+QP DIE+   ++ L +I  E  +ILAVT AN D+A SDA+KLAK+V
Sbjct:   81 EYAEFLHKKGHRFVDFDAVRKEIEDETDRVTGQNKGISPHPINLRVFSPNVLNLTLIDLPGLTKVPVGDQPADIEQQIRDMILTFINRETCLILAVTPANSDLATSDALKLAKEV 195          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 70/180 (38.89%), Postives = 99/180 (55.00%), Query Frame = 3
Query:    9 EFGTRG--ICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +F  RG  ICTRRPL L+L    S            N G D                       +E+  F HLP+ + YDF  ++ EI  +T  + G ++G++   I L+I SP V+ ++LVDLPG+TKVPVG+QP DIE     + L YI+++  +ILAVT AN D+ANSDA+++A  V
Sbjct:   83 DFLPRGNDICTRRPLVLQLLQTKS----------RANGGSD-----------------------DEWGEFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMILSYIKQDTCLILAVTPANTDLANSDALQIASIV 229          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.445e-26
Identity = 65/123 (52.85%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  177 HKKDEG-EEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            HK D+G EEYA F HLP K+  DF LV+ EI  +T  + G ++ IS VPI L I+SP VV L+L+DLPG+TKV V  QP  I    E +   Y+ + + IILA++ AN DIA SDAIKLAK V
Sbjct:   83 HKTDDGTEEYAEFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPETIAEDIESMVRTYVDKPNCIILAISPANQDIATSDAIKLAKDV 205          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.223e-25
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  177 HKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAG-SDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            H+ DEG+EYA F HLP KK  DF  V++EI  +T    G S + IS VPI L IFSP VV L+LVDLPG+TKV V  QP  I +  E +   +I + + IILA++ AN D+A SDAIK++++V
Sbjct:   77 HRIDEGKEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREV 199          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  177 HKKDEGE-EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            HK ++G  EYA F H P K+  DF  V++EI  +T  + G  + IS +PI L I+SP VV L+L+DLPG+TKV V  QP  I +  E +   Y+ + + IILA++ AN DIA SDAIKLA++V
Sbjct:   78 HKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREV 200          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  177 HKKDEGE-EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            HK DEG  EYA F HLP K+  DF  V++EI  +T    G  + IS VPI L I+SP VV L+L+DLPG+TKV V  QP  I +  E++   YI + + IILA++ AN D+A SDAIK++++V
Sbjct:   77 HKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREV 199          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DYN1_HUMAN2.016e-2853.91Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2[more]
DYN1_BOVIN2.016e-2853.91Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1[more]
DYN_DROME1.001e-2750.43Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DRP3B_ARATH1.307e-2741.01Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DYN1_CAEEL1.106e-2652.17Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
DRP3A_ARATH1.106e-2638.89Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DRP1E_ARATH1.445e-2652.85Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1B_ARATH1.223e-2551.22Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH6.070e-2547.97Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
SDLCA_SOYBN1.035e-2449.59Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
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