CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  177 HKKDEGE-EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            HK +EG  EYA F HLP K+  DF  V++EI  +T    G  + IS VPI L I+SP VV L+LVDLPG+TKV V  QP  I +  E++   YI + + IILA++ AN D+A SDAIK++++V
Sbjct:   77 HKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREV 199          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  177 HKKDEG-EEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            HK + G E+ A F HL +KK  +F LV++EI  +T  + G ++ IS +PI L IFSP VV L+L+DLPG+TKV V  QP  I    E +   Y+ + + +ILA++ AN DIA SDA+KLAK+V
Sbjct:   78 HKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVRSYVEKPNCLILAISPANQDIATSDAMKLAKEV 200          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.331e-23
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 3
Query:  180 KKDEG-EEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            K D+G  EYA F HLP KK  DF  V++EI  +T    G  + IS VPI L I+SP VV L+L+DLPG+TKV V  Q   I +  E +   YI + + IILA++ AN D+A SDAIK++++V
Sbjct:   78 KIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV 199          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_BOVIN (Interferon-induced GTP-binding protein Mx1 OS=Bos taurus GN=MX1 PE=2 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  231 KIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +I D   V++EI +    +AG   GIS   I LE+ SP V  L+L+DLPG+T+V VGNQPPDIE   + L  KYI  ++TI L V  ANVDIA ++A+++A++V
Sbjct:  121 EIPDASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPPDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQEV 224          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_CTEID (Interferon-induced GTP-binding protein Mx OS=Ctenopharyngodon idella GN=mx PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 60/173 (34.68%), Postives = 87/173 (50.29%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TR PL L+L  IS                KD N        +  ++ +  KD  E                  ++  ++K  T +AG+  GIS   I LEI S  V  L+L+DLPG+ +V  GNQP DIE+  ++L  KYI+ ++TI L V  AN+DIA ++A+++A KV
Sbjct:   73 GIVTRCPLVLKLKKIS----------------KDNNWHQWHGLMSYRDQTKKLKDPAE------------------IENAVLKAQTVLAGTGEGISHEMITLEIQSSDVPDLTLIDLPGIARVATGNQPKDIEKQIKDLIEKYIKRQETISLVVVPANIDIATTEALQMASKV 211          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_PHOVI (Interferon-induced GTP-binding protein Mx1 OS=Phoca vitulina GN=MX1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  225 DKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            + +I D   V+ EI K    +AG  +GIS   I LE+ SP V  L+L+DLPG+T+V VGNQP DI R T++L  KYI +++TI L V   NVDIA ++A+ +A++V
Sbjct:  128 EMEISDPSEVEVEISKAQNVIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEV 233          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_CANFA (Interferon-induced GTP-binding protein Mx1 OS=Canis familiaris GN=MX1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  225 DKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            + +I D   V+ EI K    +AG  +GIS   I LE+ SP V  L+L+DLPG+T+V VGNQP DI R T++L  KYI +++TI L V   NVDIA ++A+ +A++V
Sbjct:  126 EMEISDPSEVEVEINKAQDAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEV 231          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_OTABY (Interferon-induced GTP-binding protein Mx1 OS=Otaria byronia GN=MX1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  168 KKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            KK   KDE      +    + +I D   V+ EI K    +AG  +GIS   I LE+ SP V  L+L+DLPG+T+V VGNQP DI   T++L  KYI +++TI L V   NVDIA ++A+ +A++V
Sbjct:  110 KKLLNKDEWRGKVSYQDF-EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMAQEV 233          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_EUMJU (Interferon-induced GTP-binding protein Mx1 OS=Eumetopias jubatus GN=MX1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  168 KKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            KK   KDE      +    + +I D   V+ EI K    +AG  +GIS   I LE+ SP V  L+L+DLPG+T+V VGNQP DI   T++L  KYI +++TI L V   NVDIA ++A+ +A++V
Sbjct:  110 KKLLNKDEWRGKVSYQDF-EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMAEEV 233          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_PIG (Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa GN=MX2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  231 KIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            ++ D   V+ EI K    +AGS  GIS   I LE+ SP+V  L+L+DLPG+T+V VGNQP DI    + L  KYI+E+ TI L V   NVDIA ++A+++A++V
Sbjct:  175 QLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEV 278          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
SDL5A_SOYBN3.013e-2449.59Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1D_ARATH3.935e-2447.97Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DRP1A_ARATH3.331e-2348.36Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
MX1_BOVIN2.918e-1948.08Interferon-induced GTP-binding protein Mx1 OS=Bos ... [more]
MX_CTEID3.811e-1934.68Interferon-induced GTP-binding protein Mx OS=Cteno... [more]
MX1_PHOVI6.501e-1947.17Interferon-induced GTP-binding protein Mx1 OS=Phoc... [more]
MX1_CANFA8.490e-1947.17Interferon-induced GTP-binding protein Mx1 OS=Cani... [more]
MX1_OTABY2.470e-1843.20Interferon-induced GTP-binding protein Mx1 OS=Otar... [more]
MX1_EUMJU2.470e-1843.20Interferon-induced GTP-binding protein Mx1 OS=Eume... [more]
MX2_PIG4.214e-1847.12Interferon-induced GTP-binding protein Mx2 OS=Sus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
back to top