CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  231 KIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +I D   V++EI +    +AG   GIS   I LE+ SP V  L+L+DLPG+T+V VGNQP DIE   + L  KYI  ++TI L V  ANVDIA ++A+++A+ V
Sbjct:  127 EISDASQVEKEISEAQIAIAGEGMGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQDV 230          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_HORSE (Interferon-induced GTP-binding protein Mx1 OS=Equus caballus GN=MX1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            V+E++ K    +AG   GISQ  + LE+ SP V  L+L+DLPG+T+V VGNQP DI R  + L  KYI+ ++TI L V  +NVDIA ++A+ +A++V
Sbjct:  139 VEEQVRKAQNVLAGEGVGISQELVTLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEV 235          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_MACMU (Interferon-induced GTP-binding protein Mx1 OS=Macaca mulatta GN=MX1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  231 KIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +I D   V++EI K    +AG   GIS   I LEI S  V  L+L+DLPG+T+V VGNQPPDI    + L  KYI+ ++TI L V  +NVDIA ++A+ +A++V
Sbjct:  132 EILDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPPDIGYKIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEV 235          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_MOUSE (Interferon-induced GTP-binding protein Mx2 OS=Mus musculus GN=Mx2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  171 KRHKKDEGEEYAVFGHLPDKKIY--DFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            K  K +EGEE+       D ++   D   V+E I K    +AG   GIS   I L++ SP V  L+L+DLPG+T+V VGNQP DI R  + L   YI++++TI L V  +NVDIA ++A+ +A++V
Sbjct:  103 KLRKLNEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEV 228          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_RAT (Interferon-induced GTP-binding protein Mx1 OS=Rattus norvegicus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  249 LVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            LV+ EI K    +AG    IS   I LE+ SP V  L+L+DLPG+T+V VG+QP DIE   + L  +YI++++TI L V  +NVDIA ++A+K+A++V
Sbjct:  129 LVEREINKAQNLIAGEGLKISSDLISLEVSSPHVPDLTLIDLPGITRVAVGDQPADIEHKIKRLITEYIQKQETINLVVVPSNVDIATTEALKMAQEV 226          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_PONAB (Interferon-induced GTP-binding protein Mx1 OS=Pongo abelii GN=MX1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  231 KIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +I D   V++EI K    +AG   GIS   I LEI S  V  L+L+DLPG+T+V VGNQP DI    + L  KYI+ ++TI L V  +NVDIA ++A+ +A++V
Sbjct:  132 EISDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 235          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_MOUSE (Interferon-induced GTP-binding protein Mx1 OS=Mus musculus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 53/126 (42.06%), Postives = 76/126 (60.32%), Query Frame = 3
Query:  171 KRHKKDEGEEYAVFGHLPDKKIY--DFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            K  K  EGEE+       D ++   D   V+E I K    +AG   GIS   I L++ SP V  L+L+DLPG+T+V VGNQP DI R  + L   YI++++TI L V  +NVDIA ++A+ +A++V
Sbjct:   76 KLRKLKEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEV 201          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_HUMAN (Interferon-induced GTP-binding protein Mx1 OS=Homo sapiens GN=MX1 PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  231 KIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +I D   V++EI K    +AG   GIS   I LEI S  V  L+L+DLPG+T+V VGNQP DI    + L  KYI+ ++TI L V  +NVDIA ++A+ +A++V
Sbjct:  132 EISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 235          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17
Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = 3
Query:  171 KRHKKDEGEEYAVFGHLPDKKIY--DFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            K  K ++GEE+       D ++   D   V+E I      +AG   GIS   I L++ SP V  L+L+DLPG+T+V VGNQP DI R  + L   YI++++TI L V  +NVDIA ++A+ +A+KV
Sbjct:  108 KLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQKV 233          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_PIG (Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa GN=MX1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  231 KIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            ++ D   V++E+      +AG   GIS   I LE+ SP V  L+L+DLPG+T+V VGNQP DIE   + L  KYI +++TI L V   NVDIA ++A+++A++V
Sbjct:  133 ELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEV 236          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX1_SHEEP4.214e-1847.12Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MX1_HORSE4.214e-1847.42Interferon-induced GTP-binding protein Mx1 OS=Equu... [more]
MX1_MACMU5.503e-1847.12Interferon-induced GTP-binding protein Mx1 OS=Maca... [more]
MX2_MOUSE2.731e-1742.06Interferon-induced GTP-binding protein Mx2 OS=Mus ... [more]
MX1_RAT4.659e-1746.94Interferon-induced GTP-binding protein Mx1 OS=Ratt... [more]
MX1_PONAB4.659e-1746.15Interferon-induced GTP-binding protein Mx1 OS=Pong... [more]
MX1_MOUSE4.659e-1742.06Interferon-induced GTP-binding protein Mx1 OS=Mus ... [more]
MX1_HUMAN4.659e-1746.15Interferon-induced GTP-binding protein Mx1 OS=Homo... [more]
MX2_RAT6.084e-1741.27Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MX1_PIG6.084e-1744.23Interferon-induced GTP-binding protein Mx1 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
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