CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MXC_DANRE (Interferon-induced GTP-binding protein MxC OS=Danio rerio GN=mxc PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            ++  ++K    +AG+  GIS   I LEI S  V  L+L+DLPG+ +V  GNQP DIE+  ++L  K+I+ ++TI L V  AN+DIA ++A+K+A  V
Sbjct:  112 IENAVLKAQIALAGTGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKDLIEKFIKRQETISLVVVPANIDIATTEALKMASTV 208          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX3_RAT (Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus GN=Mx3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 51/126 (40.48%), Postives = 76/126 (60.32%), Query Frame = 3
Query:  171 KRHKKDEGEEYAVFGHLPDKKIY--DFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            K  K ++GEE+       D ++   D   V+E I      +AG   GIS   I L++ SP V  L+L+DLPG+T+V VGNQP DI R  + L   YI++++TI L V  +NVDIA ++A+ +A++V
Sbjct:  108 KLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPSDIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQEV 233          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MXE_DANRE (Interferon-induced GTP-binding protein MxE OS=Danio rerio GN=mxe PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  228 KKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            +++ D   +++ ++   T +AG   GIS   I LEI S  V  L+L+DLPG+ +V  GNQP DIE+  + L  K+I+ ++TI L V  AN+DIA ++A+K+A  V
Sbjct:  104 RELKDPAKIEKAVLNAQTALAGIGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKSLIEKFIKRQETISLVVVPANIDIATTEALKMASTV 208          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_EPICO (Interferon-induced GTP-binding protein Mx OS=Epinephelus coioides GN=mx PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  165 EKKRHKKDEGEEYAVFGHLP----DKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            E K  +K EGEE+  +G +     +K++ D   V+ +I +   E+AG   GIS   I LEI SP V  L+L+DLPG+ +V V  QP DI +  + L  ++I  ++TI L V   NVDIA ++A+K+A++V
Sbjct:   71 ELKMKRKKEGEEW--YGKISYRGCEKELEDPSDVENKIREAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPEDIGKQIKGLIQRFITRQETISLVVVPCNVDIATTEALKMAQEV 198          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_HUMAN (Interferon-induced GTP-binding protein Mx2 OS=Homo sapiens GN=MX2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            V++EI K    +AG+ RGIS   I LEI SP+V  L+++DLPG+T+V V NQP DI    + L  KYI+ + TI L V   NVDIA ++A+ +A +V
Sbjct:  186 VEKEIHKAQNVMAGNGRGISHELISLEITSPEVPDLTIIDLPGITRVAVDNQPRDIGLQIKALIKKYIQRQQTINLVVVPCNVDIATTEALSMAHEV 282          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_CANFA (Interferon-induced GTP-binding protein Mx2 OS=Canis familiaris GN=MX2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            V++EI +    +AG   GIS   I LEI SP+V  L+L+DLPG+T+V VGNQP DI    + L   YI++++TI L V   NVDIA ++A+ +A++V
Sbjct:  186 VEKEIRQAQNIIAGQGLGISHELISLEITSPEVPDLTLIDLPGITRVAVGNQPQDIGVQIKALIKNYIQKQETINLVVVPCNVDIATTEALSMAQEV 282          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  165 EKKRHKKDEGEEYAVFGHLP----DKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            E K  ++ EGEE+  +G +     +K+I D   V+++I     E+AG   GIS   I LEI SP V  L+L+DLPG+ +V V  QP +I    + L  K+I+ ++TI L V   NVDIA ++A+K+A++V
Sbjct:   73 ELKMKRRQEGEEW--YGKISYQDCEKEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFIKRQETISLVVVPCNVDIATTEALKMAQEV 200          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  165 EKKRHKKDEGEEYAVFGHLP----DKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            E K  +K+EGEE+  +G +     ++ I D   V+++I +   ++AG   GIS+  I LEI SP V  L+L+DLPG+ +V V  QP +I    + L  K+I +++TI L V   NVDIA ++A+ +A++V
Sbjct:   71 ELKMKRKNEGEEW--YGKITYIGFEENIKDPADVEKKIREAQNKIAGPGSGISEDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFITKQETISLVVVPCNVDIATTEALNMAQRV 198          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 51/128 (39.84%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  165 EKKRHKKDEGEEY--AVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            E K  +K EGEE+   +     +++I D   V+++I +   E+AG   GIS   I LEI SP V  L+L+DLPG+ +V V  QP +I    + L  K+I +++TI L V   NVDIA ++A+K+A++V
Sbjct:   72 ELKMKRKKEGEEWHGKISYQDHEEEIEDPSDVEKKIREAQDEMAGVGVGISDDLISLEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIRKFIMKQETISLVVVPCNVDIATTEALKMAQEV 199          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_MACMU (Interferon-induced GTP-binding protein Mx2 OS=Macaca mulatta GN=MX2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            V++EI K    +AG+  GIS   I LEI SP+V  L+++DLPG+ +V VGNQP DI    + L  +YI+ + TI L V   NVDIA ++A+ +A +V
Sbjct:  186 VEKEIHKAQNVMAGNGLGISHELISLEITSPEVPDLTIIDLPGIARVAVGNQPRDIGLQIKALIKRYIQRQQTINLVVVPCNVDIATTEALSMAHEV 282          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MXC_DANRE1.770e-1643.30Interferon-induced GTP-binding protein MxC OS=Dani... [more]
MX3_RAT1.770e-1640.48Interferon-induced GTP-binding protein Mx3 OS=Ratt... [more]
MXE_DANRE2.312e-1640.95Interferon-induced GTP-binding protein MxE OS=Dani... [more]
MX_EPICO3.020e-1640.00Interferon-induced GTP-binding protein Mx OS=Epine... [more]
MX2_HUMAN3.020e-1647.42Interferon-induced GTP-binding protein Mx2 OS=Homo... [more]
MX2_CANFA5.151e-1646.39Interferon-induced GTP-binding protein Mx2 OS=Cani... [more]
MX_PERFL6.727e-1640.00Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX_DICLA8.786e-1638.46Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MX_ONCMY1.499e-1539.84Interferon-induced GTP-binding protein Mx OS=Oncor... [more]
MX2_MACMU2.556e-1545.36Interferon-induced GTP-binding protein Mx2 OS=Maca... [more]

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Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
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