CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_BOVIN (Interferon-induced GTP-binding protein Mx2 OS=Bos taurus GN=MX2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            V+ EI +    +AG+  GIS   I LEI SP+V  L+L+DLPG+T+V V NQP DI    + L  KYI+ ++TI L V   NVDIA ++A+ +A++V
Sbjct:  182 VEWEIRRAQNIIAGNGLGISHELINLEITSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKKYIQRQETINLVVVPCNVDIATTEALSMAQEV 278          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX1_ICTPU (Interferon-induced GTP-binding protein Mx1 OS=Ictalurus punctatus GN=mx1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TR PLEL++         K+S E +   GK K                +KKD  E+Y       +++I +   V+++I +    +AG   GIS   I LE+ S  V  L+L+DLPG+ +V V  QP +I    + L  K+I +++TI L V  +NVDIA ++A+K+A++V
Sbjct:   64 GIVTRCPLELKM---------KRSREEDFWHGKIK----------------YKKDHDEDY-------EEEIQNPADVEKKIREAQDHMAGVGVGISDELISLEVTSADVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIKKFITKQETINLVVVPSNVDIATTEALKMAQEV 204          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_CHICK (Interferon-induced GTP-binding protein Mx OS=Gallus gallus GN=MX PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 53/162 (32.72%), Postives = 87/162 (53.70%), Query Frame = 3
Query:   93 SIENEENQGKDKNVESTESASATTEK----------KRHKKDEGEEY--AVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            ++  + N GK   +E+    +   +K          K  K    +E+   ++    + ++ +   VK+ I K    VAG++  IS   I LEI+SP V  L+L+DLPG+ +  VGNQP D  +  + L  KYI  ++TII+ V   NVDIA ++A+K+A++V
Sbjct:  118 AVIGDRNSGKSSVLEALSGVALPRDKGVITRCPLELKLKKMTAPQEWKGVIYYRNTEIQLQNASEVKKAIRKAQDIVAGTNGSISGELISLEIWSPDVPDLTLIDLPGIAREAVGNQPQDNGQQIKTLLKKYIGCKETIIVVVVPCNVDIATTEALKMAQEV 279          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_SOLSE (Interferon-induced GTP-binding protein Mx OS=Solea senegalensis GN=mx PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 46/123 (37.40%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  171 KRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKK 539
            KR    EG +  +     +++I D   V+++I +   ++AG   GIS+  I LEI SP V  L+L+DLPG+T+V V  QP +I    ++L  K+I +++TI L V A NVD+A ++A+++A++
Sbjct:   75 KRKNDGEGWQGKISYQDHEEEIQDPADVEKKIEEAQIQIAGVGVGISENMISLEIASPDVPDLTLIDLPGITRVAVHGQPVNIGEQIKKLIHKFITKQETICLVVHACNVDLATTEALQMAQE 197          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            V+ EI +    +AG+  GIS   I LE+ SP+V  L+L+DLPG+T+V V NQP DI    + L   YI+ ++TI L V   NVDIA ++A+ +A++V
Sbjct:  185 VEREIRRAQNIIAGNGVGISHELINLEVTSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKTYIQRQETINLVVVPCNVDIATTEALSMAQEV 281          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_ICTPU (Interferon-induced GTP-binding protein Mx2 OS=Ictalurus punctatus GN=mx2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  177 HKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            H K + E+Y       +++I D   V++ I K   E+AG+  GIS   I LE+ S  V  L+++DLPG+T+V V +QP +I   ++ L  K+I +++TI L V   NVDIA ++A+K+A +V
Sbjct:   83 HGKIKYEDY-------EEEIEDPADVEQMIRKAQNEIAGTGMGISDKLISLEVTSSNVPDLTVIDLPGITRVAVKDQPENIGDQSKRLIKKFITKQETINLVVVPCNVDIATTEALKMALEV 197          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 3
Query:  165 EKKRHKKDEGEEYAVFGHLP----DKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            E K  +K EGEE+  +G +     +++I D   V+++I +   E+AG   GIS   I LEI SP V  L+L+DLPG+ +V V  QP +I    + L   +I +++TI L V   NVDIA ++A+ +A++V
Sbjct:   71 ELKMKRKKEGEEW--YGKISYQNHEEEIEDPADVEKKIREAQDEMAGVGVGISDDLISLEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQTFITKQETISLVVVPCNVDIATTEALNMAQRV 198          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MSP1_SCHPO (Protein msp1, mitochondrial OS=Schizosaccharomyces pombe GN=msp1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  177 HKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            H  D    Y  F  +   KI DF  + + I+        S +G+   PI L I++  +  LSL+DLPG  ++   +QP D++    +L  KYIRE + IILAV AA+VD+ANS A++ +++V
Sbjct:  307 HSADTAIPYGEFSGVQLGKITDFSKI-QHILTDLNMAVPSSQGVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREPN-IILAVCAADVDLANSAALRASRRV 426          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_ANAPL (Interferon-induced GTP-binding protein Mx OS=Anas platyrhynchos GN=MX PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVEST-ESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TR PLEL+L  I +S   K  I         +N+ +  + AS      R+ +D                                VAG+   IS   I LEI SP V  L+L+DLPG+ +V + NQP DI    ++L  K I  ++TI L V   NVDIA ++A+K+A++V
Sbjct:  161 GIVTRCPLELKLKKIPTSQEWKGKISY-------RNISTDLQHASEVENAIRNAQDV-------------------------------VAGTKGNISGELISLEICSPYVPDLTLIDLPGIARVAMRNQPQDIGEQIKKLIKKIISSKETINLVVVPCNVDIATTEALKMAQEV 296          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX_LARCR (Interferon-induced GTP-binding protein Mx OS=Larimichthys crocea GN=mx PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 47/131 (35.88%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  165 EKKRHKKDEGEEYAVFGHLPDKKIYDFEL-----VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            E K  +K EGEE+  +G +  +  Y+ E+     V+++I +   ++AG+   I+   I LEI SP V  L+L+ LPG+ +V V  QP +I    + L  K+I++++TI L V   N+DIA ++A+K+A++V
Sbjct:   71 ELKMKRKKEGEEW--YGKISYQD-YEEEIEVPADVEKKIREAQDKMAGNGVEIADDLISLEIASPDVPDLTLIALPGIARVAVKKQPENIGDQIKRLIQKFIKKQETINLVVVPCNMDIATTEALKMAQEV 198          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX2_BOVIN2.556e-1546.39Interferon-induced GTP-binding protein Mx2 OS=Bos ... [more]
MX1_ICTPU4.360e-1534.10Interferon-induced GTP-binding protein Mx1 OS=Icta... [more]
MX_CHICK7.438e-1532.72Interferon-induced GTP-binding protein Mx OS=Gallu... [more]
MX_SOLSE9.714e-1537.40Interferon-induced GTP-binding protein Mx OS=Solea... [more]
MX2_SHEEP9.714e-1544.33Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]
MX2_ICTPU1.657e-1438.52Interferon-induced GTP-binding protein Mx2 OS=Icta... [more]
MX_SINCH2.826e-1438.46Interferon-induced GTP-binding protein Mx OS=Sinip... [more]
MSP1_SCHPO2.393e-1336.89Protein msp1, mitochondrial OS=Schizosaccharomyces... [more]
MX_ANAPL1.187e-1233.33Interferon-induced GTP-binding protein Mx OS=Anas ... [more]
MX_LARCR1.551e-1235.88Interferon-induced GTP-binding protein Mx OS=Larim... [more]

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Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
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