CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MXA_DANRE (Interferon-induced GTP-binding protein MxA OS=Danio rerio GN=mxa PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAK 536
            V+++I +   E+AG+  GIS+  I L+I S  V  L+L+DLPG+ +V V  QP +I    + L  K++  ++TI L V   NVDIA ++A+++A+
Sbjct:  106 VEKKIRQAQDEMAGAGVGISEELISLQITSADVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRKFVTRQETINLVVVPCNVDIATTEALQMAQ 200          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae GN=MGM1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 3
Query:  207 VFGHLPDKKIY---DFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAK 536
            V    P  ++Y   DF+ VK  +++    V  S+  +S+ PI L I S +V  LSLVDLPG  +V   +QP +++    +L  KY+   + IILA++AA+VD+ANS A+K +K
Sbjct:  261 VTADFPSMRLYNIKDFKEVKRMLMELNMAVPTSE-AVSEEPIQLTIKSSRVPDLSLVDLPGYIQVEAADQPIELKTKIRDLCEKYLTAPN-IILAISAADVDLANSSALKASK 371          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 42/121 (34.71%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  174 RHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAK 536
            R K+DE     +     ++   D   V+++I +   E+AG+  GIS+  I L+I S  V  L+L+DLPG+ +V V  QP +I    + L   +I +++TI L V   NVDIA ++A+++A+
Sbjct:   80 RSKEDEKWHGRISYQNHEEDFDDPAEVEKKIREAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRMFITKQETINLVVVPCNVDIATTEALQMAQ 200          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: MX2_BUBBU (Interferon-induced GTP-binding protein Mx2 OS=Bubalus bubalis GN=MX2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  252 VKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIAN---SDAIKLAKKV 542
            V+ EI +    +AG+ RGIS   I LE+ SP V  L+L+DLPG+T+V V NQP DI    + L    I+ ++TI L V   NVDIA    ++A+ +A++V
Sbjct:  182 VEWEIRRAQNIIAGNGRGISHELINLEVTSPDVPDLTLIDLPGITRVAVENQPQDIGLQIKAL---IIQRQETINLVVVPCNVDIATKKYTEALSMAQEV 278          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MXA_DANRE1.715e-1138.95Interferon-induced GTP-binding protein MxA OS=Dani... [more]
MGM1_YEAST1.715e-1138.94Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar... [more]
MXB_DANRE2.239e-1134.71Interferon-induced GTP-binding protein MxB OS=Dani... [more]
MX2_BUBBU2.239e-1143.00Interferon-induced GTP-binding protein Mx2 OS=Buba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
back to top