GR312993

Overview
NameGR312993
Unique NameGR312993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.518e-27
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDV+PLRRVNQ+I LL  GAREA+ RN+K+IAECLA+ELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct:  139 TVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.518e-27
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 1
Query:    4 VRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            VRRQAVD+SPLRRVNQ+I LLT GAREA+ RNIK+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  137 VRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.982e-27
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSPLRRVNQ+I LL  GAREA+ RNIK+IAECLA+ELINA KGSSNSYAIKKKDELERVAKSNR
Sbjct:  133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.589e-27
Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = 1
Query:    4 VRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            VRRQAVD+SPLRRVNQ+I L+T GAREA+ RNIK+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:  137 VRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 3.382e-27
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1
Query:    7 RRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            RRQAVDVSPLRRVNQ+I+LLTIGAREA+ RNIK+IAE LAEELINAAKGSS SYAIKKKDELERVAKSNR
Sbjct:  156 RRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.285e-26
Identity = 59/71 (83.10%), Postives = 68/71 (95.77%), Query Frame = 1
Query:    4 VRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            VRRQAVD+SPLRRV+Q+I LLT GARE++ RNIK+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   84 VRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.470e-22
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            TVRRQAVDVSP+RRVN ++ LLT G R A+ RNI+++AECLA+ELINA+KGS NSY+IK+KD LER AKS+R
Sbjct:  119 TVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.348e-18
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    4 VRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            VR QAVDVSPLRR+N ++ LL +G R  + RN KS+AECLA+E++NA+K  + S+AI KK++LERVA SNR
Sbjct:   78 VRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 TVRRQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            ++RR +VDVSPL+R++ +IS L+ G R AS RN  ++AE +A ELI A+  S NSYA+ KK E+ER+A+SNR
Sbjct:  137 SMRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
BLAST of GR312993 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   10 RQAVDVSPLRRVNQSISLLTIGAREASLRNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 216
            R +VDV+P RRV+Q++  +  GAR+ +  N K I ECLAEELI AA+G   SYAI++K+E+ER+A S+R
Sbjct:  137 RVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
The following BLAST results are available for this feature:
BLAST of GR312993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS5_CAEEL1.518e-2786.1140S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS51_ARATH1.518e-2785.9240S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_RAT1.982e-2787.5040S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS52_ARATH2.589e-2784.5140S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_YEAST3.382e-2790.0040S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_NICPL1.285e-2683.1040S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_DICDI1.470e-2270.8340S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI8.348e-1860.5640S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS5_ENCCU1.128e-1454.1740S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_AERPE4.288e-1453.6230S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC06057B08 RindPdigS Citrus sinensis cDNA clone N14B08, mRNA sequence.