GR312992

Overview
NameGR312992
Unique NameGR312992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13533 contig Csv1_Contig13533:554..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.083e-33
Identity = 62/72 (86.11%), Postives = 70/72 (97.22%), Query Frame = 1
Query:    1 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            TKVS+YPPCP+PDL+KGLRAHTDAGGIILLFQDD V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+
Sbjct:  163 TKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGR 234          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.260e-33
Identity = 61/72 (84.72%), Postives = 71/72 (98.61%), Query Frame = 1
Query:    1 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            TKVS+YPPCP+PDL++GLRAHTDAGGIILLFQDD+V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+
Sbjct:  163 TKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGR 234          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.869e-33
Identity = 60/72 (83.33%), Postives = 70/72 (97.22%), Query Frame = 1
Query:    1 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            TKVSNYPPCP+P+L KGLRAHTDAGG+ILLFQDD+V+GLQLLKDG+W+DVPP+ HSIV+NLGDQ+EVITNGK
Sbjct:  158 TKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGK 229          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.971e-33
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 1
Query:    1 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            TKVSNYP CPKP++IKGLRAHTDAGGIILLFQDDKV+GLQLLKDG WIDVPPL HSIV+NLGDQ+EVITNG+
Sbjct:  160 TKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGR 231          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.653e-28
Identity = 54/72 (75.00%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            TKVS+YPPCP+ DL+KGLRAHTDAGG+ILLFQDD+V GLQ+LKDG+WIDV PL  +IV+N GDQIEV++NG+
Sbjct:  157 TKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGR 228          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.622e-16
Identity = 34/70 (48.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNG 213
            +++ YPPCP+PD + GL  H+D+ G+ +L Q + V GLQ+ KDG+W+ V PL ++ +VN+GD +E+ITNG
Sbjct:  214 RMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNG 283          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.787e-15
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KDG W DV  + ++++V++GDQ+E+++NGK
Sbjct:  215 KINYYPPCPRPDLALGVVAHTDMSYITILVPNE-VQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGK 284          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.946e-15
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            K++ YPPCP+PDL  G+ AHTD   + +L  +D V GLQ  KDG+W DV  + +++V+++GDQ+E+++NGK
Sbjct:  204 KINYYPPCPRPDLALGVVAHTDMSTVTILVPND-VQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGK 273          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.439e-14
Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   + +++V+++GDQIE+++NGK
Sbjct:  202 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGK 271          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.206e-14
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KD  W DV  + +++++++GDQIE+++NGK
Sbjct:  204 KINYYPPCPRPDLALGVVAHTDMSAITILVPNE-VQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGK 273          
The following BLAST results are available for this feature:
BLAST of GR312992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ACCO1_ORYSI3.083e-3386.111-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ5.260e-3384.721-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_PERAE6.869e-3383.331-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_BRAJU8.971e-3387.501-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO_MUSAC6.653e-2875.001-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
SRG1_ARATH2.622e-1648.57Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_PETHY3.787e-1547.89Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_MALDO4.946e-1547.89Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FLS_CITUN1.439e-1446.48Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
FLS_PETCR3.206e-1446.48Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]

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Properties
Property NameValue
Genbank descriptionC06057B07 RindPdigS Citrus sinensis cDNA clone N14A04, mRNA sequence.