GR312992

Overview
NameGR312992
Unique NameGR312992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13533 contig Csv1_Contig13533:554..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.489e-11
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   16 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            +PPCP+PDL  G   H+D G  + +   D + GLQ+ ++G W DVP +  ++++N+GD +++ITN K
Sbjct:  226 FPPCPEPDLTFGTSKHSD-GSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDK 291          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.945e-11
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SI++++GD IE+++NGK
Sbjct:  219 KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGK 288          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.540e-11
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SIV+++GD +E+++NGK
Sbjct:  217 KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGK 286          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.540e-11
Identity = 30/71 (42.25%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNG 213
            ++++YP CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+  PP+  S+VVN+GD + ++TNG
Sbjct:  206 QLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNN-TAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNG 275          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.333e-11
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGK 216
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    +  SIV+++GD +E+++NGK
Sbjct:  213 KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGK 282          
BLAST of GR312992 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.659e-11
Identity = 30/71 (42.25%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNG 213
            ++++YP CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+ VPP   S+VVN+GD   +++NG
Sbjct:  213 QLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNN-TAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNG 282          
The following BLAST results are available for this feature:
BLAST of GR312992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ACCH2_ARATH1.489e-1140.301-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
LDOX_VITVI1.945e-1139.44Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_MALDO2.540e-1139.44Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
G3OX2_ARATH2.540e-1142.25Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
LDOX_ARATH4.333e-1139.44Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
G3OX1_ARATH5.659e-1142.25Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC06057B07 RindPdigS Citrus sinensis cDNA clone N14A04, mRNA sequence.