GR312991

Overview
NameGR312991
Unique NameGR312991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:648..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L
Sbjct:  138 TLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSL 217          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TF+LV+ V + +D  R      +   APL +G A+   HL  I ++G  +NPARS G A++      W  HW++WVGP  G  LA +
Sbjct:  146 TFILVFVVKAVSDPGRQ----DIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGV---WTYHWVYWVGPIAGGLLAGI 225          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 TFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA 255
            TF L++TV++   D K+ + D   P+L     GF V    LA    +G  +NPARS G A++      W DHW++WVGP +G GLA
Sbjct:  146 TFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLA 224          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 TFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A+      G   +W++WVGP +G GLA L
Sbjct:  150 TFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAG---NWVYWVGPLIGGGLAGL 230          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIFWVGPFVGAGL 252
            T + +  +  ATDA+  A        AP+ IG A+ L+HL +IP+T T +NPARS G A+      GW     W+FWV P +GA +
Sbjct:  142 TAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALQQLWLFWVAPLIGAAI 218          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L
Sbjct:  138 TLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSL 217          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 TFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L
Sbjct:  138 TLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSL 217          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 TFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAAL 261
            TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +++  +   W  HWIFWVGP +GA LAAL
Sbjct:  152 TFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGPLLGAALAAL 232          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 TFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA 255
            TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++      +  +WI+W GP +G GLA
Sbjct:  150 TFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAG---DFSQNWIYWAGPLIGGGLA 228          
BLAST of GR312991 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 TFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA 255
            TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++      +  +WI+W GP +G GLA
Sbjct:  150 TFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAG---DFSQNWIYWAGPLIGGGLA 228          
The following BLAST results are available for this feature:
BLAST of GR312991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
MIP_MOUSE4.446e-1139.08Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQP_DROME4.446e-1137.93Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIP41_ARATH5.807e-1140.70Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP22_MAIZE5.807e-1143.18Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
AQPZ_PSEPK5.807e-1139.53Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
MIP_CAVPO7.584e-1139.08Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_CANFA7.584e-1139.08Lens fiber major intrinsic protein OS=Canis famili... [more]
TIPA_PHAVU9.905e-1145.45Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP2_TOBAC9.905e-1141.86Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC9.905e-1141.86Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06057B05 RindPdigS Citrus sinensis cDNA clone N13F07, mRNA sequence.