GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG + E  PKFIKSGDAAIVKM+PSKPMCVE+FTD+PPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  382 TGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVE 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG + E +PKFIKSGDAAIVKMVPSKPMCVE FTDYPPLGRFAVRD+RQTVAVGVIKSV
Sbjct:  382 TGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSV 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E SPKF+KSGD+AIVKMVPSKPMCVEA+TDYPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  381 SGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVE 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E SPKF+KSGD+AIVKMVPSKPMCVEA+TDYPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  381 SGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVE 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG   E SPKF+K+GDAA+VK VPSKPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIKSV
Sbjct:  381 TGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSV 439          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PKF+KSGD+AIVKM+PSKPMCVEA+TDYPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  381 SGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVE 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 1
Query:   16 ETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            E SPKF+KSGD+AIVKMVPSKPMCVEA+TDYPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  385 EDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVE 439          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E SPKF+K+GDAAIV+M+PSKPMCVE FT+YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  381 SGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSVE 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +PKF+KSGDAAIVK+VPSKPMCVE++ +YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  383 TGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVE 442          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E +PKF+KSGDA +VKMVPSK MCVE F DYPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  380 TGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVE 439          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_ASPOR1.705e-2385.00Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_AJECG1.705e-2388.14Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A2_RHIRA6.478e-2383.33Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA6.478e-2383.33Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_ASHGO1.885e-2284.75Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_ABSGL1.885e-2280.00Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A3_RHIRA1.885e-2289.09Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_ARXAD2.462e-2280.00Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_PIRIN3.215e-2280.00Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_PUCGR7.163e-2281.67Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.