GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 29/60 (48.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+F+K+GDAAIVK  P KPM +E ++++P LGRFA+RD+ +T+ +G++  V+
Sbjct:  371 TGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+F+K+GDAAIV+  P KP+ VE F++ P LGRFA+RD+ +TV +G++  V+
Sbjct:  369 TGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVK 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E  P++IK GD+AIV+  P KP+ VE ++++PPLGRFA+RD  +T+A GV+  V+
Sbjct:  369 TGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVK 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+F+KSGD+AIVKM P K + VE F ++P LGRFA+RD+ +TV VGV+  V+
Sbjct:  369 TGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVK 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+FIK+GD+AIV + P+KPM +E   + P LGRFA+RD+ QTVA G++ S++
Sbjct:  366 TGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKELPQLGRFAIRDMGQTVAAGMVISIQ 425          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGV 165
            TG   E +P F+K+GDAAIVK++P+KPM +E+  + P LGRFA+RD+  TVA G+
Sbjct:  365 TGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_HELAM2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_HYPBU1.768e-1248.33Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_AERPE2.309e-1250.00Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_THEPD3.016e-1250.00Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_SULTO3.016e-1255.00Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_THESM5.145e-1251.67Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_METVS6.720e-1254.55Elongation factor 1-alpha OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.