GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGV 165
            TG   E +P F+K+GDAAIVK++P+KPM +E+  + P LGRFA+RD+  TVA G+
Sbjct:  365 TGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG   E +P F+K+GDAAI+K  P+KP+C+E   ++P LGRFA+RD+ QT+A G+  +V
Sbjct:  361 TGQTLEENPTFLKAGDAAIIKCHPTKPLCLENAKEFPQLGRFAIRDMGQTIAAGMCINV 419          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVI 168
            TG   E +P+F+K+GDAAIVK+ P++PM +E   D PP+GRFA+RD+  T+  G++
Sbjct:  361 TGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+FIK+GD+AIV + P+KPM +E   + P +GRFA+RD+ QTVA G++ S++
Sbjct:  366 TGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQ 425          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E  P+FIK GD AIVK+ P KP+  E F+++P LGRFA+RD+ +T+A G I  V+
Sbjct:  378 TGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEVK 437          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+FIK+GD+AIV + P+KPM +E   + P +GRFA+RD+ QTVA G++ S++
Sbjct:  366 TGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQ 425          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P F+K GDAA+V   P KPM +E F ++ PLGRFA+RD+ +TV +G++  V+
Sbjct:  373 TGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGV 165
            TG   E +P F+K+GDAAIVK++P+KP+ +E+  + P LGRFA+RD+  TVA G+
Sbjct:  365 TGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            +G   E +P +IK+GDAAIV + P++PMC+E  ++ P LGRFA+RD+  T+A G+  SV
Sbjct:  360 SGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSV 418          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P F+K+GDAAIVK++P+KPM +E   + P LGRFA+RD+  TVA G+   V+
Sbjct:  365 TGEVKEENPDFLKAGDAAIVKIMPTKPMVIENVKEIPQLGRFAIRDMGMTVAAGMCIDVK 424          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_METVA6.720e-1254.55Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METHJ6.720e-1250.85Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_ARCFU6.720e-1250.00Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_THEON8.776e-1250.00Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_PYRIL8.776e-1253.33Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_THECE1.146e-1150.00Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_IGNH41.497e-1148.33Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_METM72.553e-1152.73Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METBU2.553e-1149.15Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_META32.553e-1151.67Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.