GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG   E +PKF+K GD+AI+K+ P +P  +E F ++P +GRFA+RD+  T+A G++K +
Sbjct:  372 TGAVEEENPKFLKVGDSAIIKIRPVRPTPIETFKEFPEMGRFALRDMGATIAAGIVKEI 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.335e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+FIK+GD+AIVK  P K +  E F ++P LGRFA+RD+ +TV VGVI  V+
Sbjct:  369 TGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVK 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG   E +P FIK+GDAAIV + P++P+ +E   + P LGRFA+RD+ QTVA GV+  +
Sbjct:  365 TGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDI 423          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGV 165
            TG   E +P F+K+GDAAIVK++P+KP+ +E+  + P LGRFA+RD+  TVA G+
Sbjct:  365 TGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGV 165
            TG   E +P F+K+GDAAIVK++P+KP+ +E+  + P LGRFA+RD+  TVA G+
Sbjct:  365 TGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGV 165
            TG   E +P F+K+GDAAIVK++P+KP+ +E+  + P LGRFA+RD+  TVA G+
Sbjct:  365 TGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+F+K+GDAAIVK+ P+KPM +E   + P LGRFA+RD+  T+A G+   V+
Sbjct:  365 TGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVK 424          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P F+K+GDAAIV + P+KPM +E   + P LGRFA+RD+  T+A G+  SV+
Sbjct:  361 TGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVK 420          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E  P FIK+GDAAIV + P+KPM +E   + P LGRFA+RD+  T+A G+  SV+
Sbjct:  361 TGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVK 420          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG  TE +P+FIK+GD+AIV + P KP+ +E   + P LGRFA+RD+  T+A G++ S++
Sbjct:  366 TGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQ 425          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_CENSY2.553e-1145.76Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_SULAC3.335e-1153.33Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_UNCMA4.355e-1150.85Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_METMP4.355e-1152.73Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM64.355e-1152.73Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM54.355e-1152.73Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METJA4.355e-1150.00Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_METMA5.688e-1150.00Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METAC5.688e-1151.67Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_PYRAB7.429e-1148.33Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.