GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG   E +P FIK+GDAAI+ + P+KPM +E   + P LGRFA+RD+  T+A G+ ++V
Sbjct:  363 TGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG   E +P F+K+GDAAIVK+ P++PM +E   + P LGRFAVRD+  T+A GV   +
Sbjct:  361 TGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDI 419          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGV 165
            TG   E +P F+K+G+AA+VK+ P+KP+ +E   D P +GRFA+RD+ QTVA G+
Sbjct:  351 TGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +P F+KSGDAAIV++ PS+PM +E+  + P LGRFA+RD+  T+A G+  +V+
Sbjct:  361 SGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQ 420          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E  P+FIK GD A+V++ P KP+ VE F+D P LGRF++RD+ +TVA G I  ++
Sbjct:  377 TGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQIIEIK 436          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_METTP7.429e-1149.15Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METMJ7.429e-1150.85Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_METTH9.703e-1150.91Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_METPE9.703e-1148.33Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_CALMQ9.703e-1150.00Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.