GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.355e-22
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG + E SPKF+KSGDA IVK+VPSKPMCVE++ +YPPLGRFAVRD+RQTVAVG+IKSV+
Sbjct:  381 TGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVD 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.355e-22
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E SPKF+KSGDA I KMVPSKPMCVEAFTDY PLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  381 SGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.355e-22
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E SPKF+KSGDA I KMVPSKPMCVEAFTDY PLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  381 SGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG  TE  PKFIKSGDAA++ +VPSKP+CVEAF+D+PPLGRFAVRD+RQTVAVGVIKSV
Sbjct:  383 TGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSV 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E SPK IKSGDAA+VKMV SKPMCVEAFT YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  375 SGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVE 434          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+KSGDAA+VK VPSKPMCVEAF++YPPLGRFAVRD+RQTVAVGVIKSV+
Sbjct:  381 SGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVD 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PK IKSGDAA+VKMV SKPMCVEAFT YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  375 SGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVE 434          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PKF+KSGDAAIV M+P KPMCVE+F+DYPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  383 SGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVE 442          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG +TE SPKF+KSGDA IV+++P+KP CVE+FTDY PLGRFAVRD+RQTVAVGVIKSV
Sbjct:  384 TGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 442          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.034e-20
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G A E  PKFIK+GDAAI+KM PSKPMCVE+F +YPPLGRFAVRD++QTVAVGVIK VE
Sbjct:  268 SGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVE 327          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_SCHCO9.355e-2276.67Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A2_SCHPO9.355e-2281.67Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO9.355e-2281.67Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_ARTSA1.222e-2179.66Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1AC_PORPU2.084e-2183.33Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_YEAST3.555e-2178.33Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_PORYE4.643e-2181.67Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A0_XENLA4.643e-2176.67Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A3_OSCTI6.063e-2177.97Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_EIMBO1.034e-2076.67Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.