GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            +G   E +PK IKSGDAA+V M P KP+CVEAFTDYPPLGRFAVRD++QTVAVGVIKSV
Sbjct:  367 SGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSV 425          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.327e-19
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PKF+KSGDAAIVK++P KPM VE F++YPPLGRFAVRD+RQTVAVGVIK+V+
Sbjct:  383 SGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVD 442          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.345e-19
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKM+P+KPM VE F +YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  371 SGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.345e-19
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKM+P+KPM VE F +YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  371 SGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.345e-19
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKMVP+KPM VE F+ YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  371 SGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.345e-19
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   ET PK +KSGDAAI+ ++PSK MCVE+F+ YPPLGRFAVRD+RQTVAVGVIK V+
Sbjct:  385 SGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVD 444          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.675e-19
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            +G   E +PK IKSGDAAIV+MVP KPMCVE F DY PLGRFAVRD+RQTVAVG+IK+V
Sbjct:  371 SGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAV 429          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.675e-19
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PKF+K+GDA  VKM+P+KPM VE F  YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  371 SGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.675e-19
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PKF+K+GDA  VKM+P+KPM VE F  YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  371 SGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.412e-19
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            +G +TE +PK IKSGDAAIV + PSKP+CVE+F ++PPLGRFAVRD+RQTVAVGVIKSV
Sbjct:  332 SGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSV 390          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_CRYPV1.951e-1976.27Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_ORYLA3.327e-1971.67Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_VICFA4.345e-1971.67Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA4.345e-1971.67Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_MAIZE4.345e-1973.33Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_HYDAT4.345e-1970.00Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_TRYBB5.675e-1974.58Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A2_HORVU5.675e-1971.67Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU5.675e-1971.67Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_RHYAM7.412e-1974.58Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.