GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.412e-19
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.680e-19
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  371 SGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.264e-18
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PK +KSGDA I+ ++P+KP+CVE FT+YPPLGRFAVRD+RQTVAVGVIK+V+
Sbjct:  383 SGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVD 442          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.264e-18
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA  VKM+P+KPM VE F+ YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  371 SGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.264e-18
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA  VKM+P+KPM VE F  YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  371 SGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA IVKM+P+KPM VE F  YPPLGRFAVRD+RQTVAVGVIK VE
Sbjct:  371 SGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRD+RQTVAVGVIK+V+
Sbjct:  371 SGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVD 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKM P+KPM VE F++YPPLGRFAVRD+RQTVAVGVIKSV+
Sbjct:  371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.817e-18
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG + E +PKFIK+GDAA+V ++P+K +CVE F +YPPLGR+AVRD++QTVAVGVIK VE
Sbjct:  372 TGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVE 431          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.817e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKM+P+KPM VE F +YPPLGRFAVRD+RQTVAVGV+K+V+
Sbjct:  371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVD 430          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_ORYSJ7.412e-1970.00Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_SOYBN9.680e-1970.00Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ONCVO1.264e-1866.67Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_MANES1.264e-1871.67Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA1.264e-1871.67Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_WHEAT1.651e-1871.67Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_TOBAC1.651e-1868.33Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH1.651e-1870.00Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TETPY2.817e-1866.67Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_SOLLC2.817e-1866.67Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.