GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E  PKF+K+GDA +VKM+P+KPM VE F +YPPLGRFAVR +RQTVAVGVIK+VE
Sbjct:  371 SGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVE 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P  +KSGDAAI+ + P KP CVE F DYPPLGRFA RD++QTVAVGV+KSVE
Sbjct:  386 TGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVE 445          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 37/60 (61.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G  TE +PKF+K+GDA ++++ PSKP+CVE F  Y PLGRFAVRD+RQTVAVGVI+ ++
Sbjct:  371 SGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIK 430          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 1
Query:   19 TSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKS 174
            T+   +K+GDAA+V++ PS+PMCVE+FT+YPPLGRFAVRD+RQTVAVGVIKS
Sbjct:  380 TAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKS 431          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKS 174
            TG     +P  +K+G + + ++VPSKPMCVE F+DYPPLGRFAVRD+RQTVAVG+IKS
Sbjct:  372 TGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            +G   E  PKFIKSGDAAIV M P KPMCVE+FTDYPPLG  +  D+RQTVAVGVIKSV
Sbjct:  371 SGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSV 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.497e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            +G   E +PK IKSGD+A+V + P KPM VE FT+YPPLGRFA+RD+RQT+AVG+I  ++
Sbjct:  369 SGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLK 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.497e-16
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 TGXATETS-PKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG + E   P++IK+GD+A+VK+VP+KP+CVE F  +PPLGRFAVRD++QTVAVGV+K+V
Sbjct:  369 TGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+FIK G++AIVK  P KP+CVE F+D+PPLGRFA+RD+ +TV VGVI  V+
Sbjct:  369 TGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 33/59 (55.93%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG   E +PKF+K+G++ IV++VP+KP+CVE F+ Y  LGRF +RD+++TVAVGVI+ V
Sbjct:  368 TGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEV 426          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A1_DAUCA1.826e-1768.33Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A1_XENLA5.312e-1766.67Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A1_EUPCR5.312e-1761.67Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_DICDI2.018e-1673.08Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_BLAHO2.018e-1663.79Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_EUGGR2.636e-1672.88Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_PLAFK4.497e-1660.00Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_ENTHI4.497e-1663.33Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_METS53.807e-1560.00Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A2_EUPCR3.223e-1455.93Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.