GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.497e-14
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+F+K GD AIVK  P KP+CVE + ++PPLGRFA+RD+ +TV VG+I  V+
Sbjct:  369 TGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +P+FIK GDAAIV+  P KP+ VE ++D+PPLGRFA+RD+ +T+ +GV+  V+
Sbjct:  370 TGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E  P+FIK GD AIVK+ P KP+  E F+D+PPLGRFA+RD+ +T+A G I  V+
Sbjct:  378 TGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E  P+FIK GD AIVK+ P KP+  E F+D+PPLGRFA+RD+ +T+A G I  V+
Sbjct:  378 TGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E  P+FIK GD AIVK+ P KP+  E F+D+PPLGRFA+RD+ +T+A G I  V+
Sbjct:  378 TGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVR 135
            TG +TE +PK IKSGDAAIV +VPSKP+CVE+F ++PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_SULSO5.497e-1455.00Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_STAMF1.599e-1353.33Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_SPOFR2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_PYRCJ2.728e-1356.67Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAR2.728e-1356.67Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_PYRAE2.728e-1356.67Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_HELZE2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI2.728e-1373.33Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]

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Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.