GR312984

Overview
NameGR312984
Unique NameGR312984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:612..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.543e-35
Identity = 68/105 (64.76%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E  E H RL IDPKYNDQQLRATV+LP GTG+++ VAV+ +GEK +EA  AGADLVG ++LI++I+ G ++FD LIA+PDMM +VA LG++LGPRGLMP+PK
Sbjct:   36 KFIETVEVHCRLGIDPKYNDQQLRATVTLPNGTGQTLRVAVITRGEKINEASTAGADLVGAEELIDEIQNGRLDFDCLIATPDMMPQVAKLGRVLGPRGLMPSPK 140          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.680e-34
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AE H RL IDPKY DQQLR TV LP+GTG+ + VAV+A+GEK  EA+NAGAD VG +DLIE+I  G M+FD LIA+PD+M +VA LG++LGPRGLMP+PK
Sbjct:   37 KFEEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVVEAQNAGADRVGYEDLIEEISKGMMDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPK 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.680e-34
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KFTE AEAH  L ID KY DQQLR T+ LPKGTGK V +AV+AQGEK +EA  AGADL G +DLI+ I  G ++FD+LIA+PDMM  +A LGK+LGPRGLMP+PK+
Sbjct:   36 KFTETAEAHISLKIDTKYADQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMKGDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKS 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.195e-34
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KF E  EAH RL IDPKY DQQLR TV+LP GTG+ + +AV+ +GEK +EA  AGADL G +DL++ I  G M FD LI++PDMM KVA LG++LGPRGLMPNPKA
Sbjct:   36 KFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKA 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.195e-34
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E  EAH RL IDPKY DQQ+R TV+LP GTG+++ +AV+A+GEK  EAK+AGADL G ++L++ I  G M FD LIA+PDMM KVA LG++LGPRGLMPNPK
Sbjct:   36 KFDETIEAHVRLGIDPKYTDQQIRTTVTLPNGTGQTIRIAVIARGEKVAEAKSAGADLAGEEELVDSISKGEMGFDLLIATPDMMPKVAKLGRVLGPRGLMPNPK 140          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.195e-34
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KF E  EAH RL IDPKY DQQLR TV+LP GTG+ + +AV+ +GEK +EA  AGADL G +DL++ I  G M FD LI++PDMM KVA LG++LGPRGLMPNPKA
Sbjct:   36 KFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKA 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.195e-34
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KF E AEAH  L ++PKY DQQLRATV LPKGTGK V+VAV+A+GEK  EA NAGAD+ G ++LI++I  G ++FDKLIA+PD+M  +A LG++LGPRGLMP+PKA
Sbjct:   36 KFKETAEAHISLGLNPKYADQQLRATVILPKGTGKLVKVAVIAKGEKLTEAMNAGADISGSEELIDEISKGRLDFDKLIATPDIMPLIAKLGRVLGPRGLMPSPKA 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.889e-34
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KF E  EAH RL IDPKY DQQLR TV+LP GTG++V +AV+  GEK   AK AGA+L G +DL+E I  G M FD LIA+PDMM KVA LG++LGPRGLMPNPKA
Sbjct:   36 KFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTSGEKVAAAKAAGAELAGDEDLVEAISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKA 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.386e-34
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AE H RL IDPKY DQQLR TV LP+GTG+ + VAV+A+GEK  EA+NAGAD VG +DLIE+I  G ++FD LIA+PD+M +VA LG++LGPRGLMP+PK
Sbjct:   37 KFDEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVTEAQNAGADRVGFEDLIEEIGKGVIDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPK 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.423e-33
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E AEAH RL IDPKY DQQLR TV+ PKGTG+SV VAV+  GE+   A+ +GADLVG ++LIE I+ G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK
Sbjct:   37 KFDETAEAHIRLGIDPKYTDQQLRTTVAFPKGTGQSVRVAVITSGEQVKVAEESGADLVGSEELIEDIQKGMMDFEVLIATPDMMPKVARLGRQLGPRGLMPSPK 141          
The following BLAST results are available for this feature:
BLAST of GR312984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_CYAPA7.543e-3564.7650S ribosomal protein L1, cyanelle OS=Cyanophora p... [more]
RL1_SYNJB1.680e-3466.6750S ribosomal protein L1 OS=Synechococcus sp. GN=r... [more]
RK1_RHDSA1.680e-3466.0450S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RL1_PROMT2.195e-3464.1550S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM42.195e-3464.7650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM12.195e-3464.1550S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RK1_PORPU2.195e-3465.0950S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_SYNS94.889e-3466.0450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNJA6.386e-3465.7150S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNP21.423e-3365.7150S ribosomal protein L1 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC06057A08 RindPdigS Citrus sinensis cDNA clone N08C11, mRNA sequence.