GR312984

Overview
NameGR312984
Unique NameGR312984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:612..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_DESAD (50S ribosomal protein L1 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.472e-30
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E  +    L +DPKY+DQ +R  V+LP G GK + VA    GEK  EAK AGAD VGGDDL+ ++K G+++FDK IA+PDMM KV  +G++LGPRGLMPN K
Sbjct:   36 KFDETVDVAINLGVDPKYSDQMIRGAVTLPNGLGKEIRVACFVSGEKEAEAKEAGADFVGGDDLVAKVKDGWLDFDKAIATPDMMAKVGQIGRVLGPRGLMPNAK 140          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_RHILW (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E  E    L +DP++ DQ +R  V+LP GTG++V VAV A+G K DEAK AGAD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MPNPK
Sbjct:   35 KFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGVKADEAKAAGADIVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPK 139          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_RHIEC (50S ribosomal protein L1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E  E    L +DP++ DQ +R  V+LP GTG++V VAV A+G K DEAK AGAD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MPNPK
Sbjct:   35 KFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADVVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPK 139          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_RHIE6 (50S ribosomal protein L1 OS=Rhizobium etli (strain CIAT 652) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E  E    L +DP++ DQ +R  V+LP GTG++V VAV A+G K DEAK AGAD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MPNPK
Sbjct:   35 KFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADVVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPK 139          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            KF E  E H +  I+P  +DQQ+R T+SLP GTGK+V+V V  +GEK +EAK AGAD VG D+LI+QI+ G+ +FD  IA+PDMM ++  LG+ILGPRGLMP+PKA
Sbjct:   37 KFDESIELHIKTGIEPSKSDQQVRGTISLPHGTGKNVKVLVFTRGEKVEEAKAAGADFVGSDELIQQIQKGWTDFDVAIATPDMMREIGRLGRILGPRGLMPSPKA 142          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 62/106 (58.49%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    1 TKFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            TKF E  E   +L +DP++ DQ +R TV+LP GTGK+V VAV A+G K +EA  AGAD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPR LMPNPK
Sbjct:   36 TKFDETIEIAMKLGVDPRHADQMVRGTVNLPNGTGKTVRVAVFARGPKAEEATAAGADIVGAEDLMETVQGGTIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPK 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_CHLCV (50S ribosomal protein L1 OS=Chlamydophila caviae GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 60/106 (56.60%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            +F +  +   +L IDPK +DQQ+R +VSLP GTGK++++ V A GEK  EA +AGAD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKA
Sbjct:   37 RFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLKILVFAAGEKAKEALDAGADFVGSDDLVERIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKA 142          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_RHISN (50S ribosomal protein L1 OS=Rhizobium sp. (strain NGR234) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.511e-30
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 318
            KF E  E    L +DP++ DQ +R  V+LP GTG+SV VAV A+G K DEAK AGAD+VG +DL+E ++GG ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK
Sbjct:   37 KFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEDLVEIVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPK 141          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_DEIGD (50S ribosomal protein L1 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.511e-30
Identity = 60/107 (56.07%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKA 321
            KF E  E HFRL IDP+ +DQ +R TV+LP GTGK+V VAV+ +G+    A+ AGAD+VGG+DLI++I  GFM+FD ++A+PDMM ++   L ++LGPRGL+PNPK+
Sbjct:   37 KFDETVEVHFRLGIDPRKSDQNVRGTVALPHGTGKTVRVAVITKGDNVAAAEAAGADVVGGEDLIDRIANGFMDFDAVVATPDMMAQIGQKLARLLGPRGLLPNPKS 143          
BLAST of GR312984 vs. ExPASy Swiss-Prot
Match: RL1_CHLFF (50S ribosomal protein L1 OS=Chlamydophila felis (strain Fe/C-56) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.511e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    4 KFTEIAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVEVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKA 321
            +F +  +   +L IDPK +DQQ+R +VSLP GTGK++ + V A GEK  EA +AGAD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKA
Sbjct:   37 RFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLRILVFAAGEKAKEALDAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKA 142          
The following BLAST results are available for this feature:
BLAST of GR312984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_DESAD1.472e-3056.1950S ribosomal protein L1 OS=Desulfovibrio salexige... [more]
RL1_RHILW1.923e-3058.1050S ribosomal protein L1 OS=Rhizobium leguminosaru... [more]
RL1_RHIEC1.923e-3058.1050S ribosomal protein L1 OS=Rhizobium etli (strain... [more]
RL1_RHIE61.923e-3058.1050S ribosomal protein L1 OS=Rhizobium etli (strain... [more]
RL1_KOSOT1.923e-3058.4950S ribosomal protein L1 OS=Kosmotoga olearia (str... [more]
RL1_JANSC1.923e-3058.4950S ribosomal protein L1 OS=Jannaschia sp. (strain... [more]
RL1_CHLCV1.923e-3056.6050S ribosomal protein L1 OS=Chlamydophila caviae G... [more]
RL1_RHISN2.511e-3058.1050S ribosomal protein L1 OS=Rhizobium sp. (strain ... [more]
RL1_DEIGD2.511e-3056.0750S ribosomal protein L1 OS=Deinococcus geothermal... [more]
RL1_CHLFF2.511e-3056.6050S ribosomal protein L1 OS=Chlamydophila felis (s... [more]

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Properties
Property NameValue
Genbank descriptionC06057A08 RindPdigS Citrus sinensis cDNA clone N08C11, mRNA sequence.