GR312980

Overview
NameGR312980
Unique NameGR312980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.407e-25
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV++++++D ++ P GW EW+GDFAL TLYYAEY NTG GSST +RV W GYHV+ S +  + FTV NF+ G+ W+  + VP+ SGL
Sbjct:  484 SRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINS-TDANNFTVENFLLGDGWMVQSGVPYISGL 571          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.136e-25
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTVY+++++D  + P GW EW+GDFAL TLYYAEY NTGPGS+T NRV W GYHV+ S +  + FTV        W+  T VP+TSGL
Sbjct:  490 SRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINS-TDAANFTVTGLFIEADWIWKTGVPYTSGL 577          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.136e-25
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEW--SGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SR   +KT++D+ I+P GW  W    +FAL+T++Y EY N GPGSST  RV+W+G+H +TS +  S+FTVG+ IAG SWLPAT VPF SGL
Sbjct:  504 SRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSTAVASRFTVGSLIAGGSWLPATGVPFKSGL 594          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.985e-25
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSG 266
            SRTV IK+F+D LI+PAGW+E   DFAL+TLYY EYMN GPG++ A RV W G+  + + ++ +QFTVG FI G++WL +T +PF+ G
Sbjct:  444 SRTVIIKSFIDDLIHPAGWLEGKKDFALETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFTVGPFIDGSTWLNSTGIPFSLG 531          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.123e-25
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +++ +  +I PAGW EW+G+FALDTL+Y EY NTG G+ T+ RVKW+G+ V+TS ++   +T G FIAG SWL +T  PF+ GL
Sbjct:  495 SRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL 583          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 263
            SRTV +++FL ++I P GW+EW+GDFAL++L+Y EYMN GPG+   +RVKW GY V    +Q   +TV  FI GN WLP+T V +T+
Sbjct:  432 SRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPSTGVKYTA 518          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.032e-24
Identity = 47/89 (52.81%), Postives = 68/89 (76.40%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +++ +  LI+PAGW EW G+FAL+TL+Y E+ N+G G+ T+ RVKW+G+ V+TS ++   FT G+FIAG+SWL +T  PF+ GL
Sbjct:  496 SRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.654e-24
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +++F+D  I+P+GW  WS +FAL TLYY E+ N+GPGSS + RV W GYH   + ++   FTV  FI GNSWLP+T V F SGL
Sbjct:  440 SRTVVMQSFIDGSIHPSGWSPWSSNFALKTLYYGEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFTVSGFIDGNSWLPSTGVVFDSGL 528          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.467e-24
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTVY+ +++   ++  GW+EW+  FALDTLYY EY+N+GPGS    RV W GY V+ S ++ ++FTV  FI G+SWLP+T V F +GL
Sbjct:  508 SRTVYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEANRFTVAEFIYGSSWLPSTGVSFLAGL 596          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.528e-24
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 263
            SRT+ +KT +D +I+PAGW+ WSGDFAL TLYYAE+MNTGPGS+ A RVKW G   LT P     +T   F+ G++W+P T VP+T+
Sbjct:  481 SRTIIMKTTIDDVIDPAGWLPWSGDFALKTLYYAEHMNTGPGSNQAQRVKWPGIKKLT-PQDALLYTGDRFLRGDTWIPQTQVPYTA 566          
The following BLAST results are available for this feature:
BLAST of GR312980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PME41_ARATH1.407e-2555.06Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME7_ARATH3.136e-2556.18Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME33_ARATH3.136e-2556.04Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME39_ARATH6.985e-2555.68Probable pectinesterase/pectinesterase inhibitor 3... [more]
PMEU1_SOLLC9.123e-2553.93Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME_PRUPE1.556e-2452.87Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME1_CITSI2.032e-2452.81Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME35_ARATH2.654e-2455.06Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME34_ARATH3.467e-2451.69Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME23_ARATH4.528e-2456.32Probable pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionC06057A03 RindPdigS Citrus sinensis cDNA clone N04A12, mRNA sequence.