GR312971

Overview
NameGR312971
Unique NameGR312971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13533 contig Csv1_Contig13533:555..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312971 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = -3
Query:    1 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVS 108
            KVSNYP CPKP++IKGLRAHTDAGGIILLFQDDKV+
Sbjct:  161 KVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVT 196          
BLAST of GR312971 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = -3
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKV 108
            KVS+YPPCP+PDL+KGLRAHTDAGGIILLFQDD V
Sbjct:  164 KVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSV 198          
BLAST of GR312971 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = -3
Query:    1 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVS 108
            KVSNYPPCP+P+L KGLRAHTDAGG+ILLFQDD+V+
Sbjct:  159 KVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVA 194          
BLAST of GR312971 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.814e-12
Identity = 30/35 (85.71%), Postives = 35/35 (100.00%), Query Frame = -3
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKV 108
            KVS+YPPCP+PDL++GLRAHTDAGGIILLFQDD+V
Sbjct:  164 KVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRV 198          
BLAST of GR312971 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = -3
Query:    4 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKV 108
            KVS+YPPCP+ DL+KGLRAHTDAGG+ILLFQDD+V
Sbjct:  158 KVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQV 192          
The following BLAST results are available for this feature:
BLAST of GR312971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO1_BRAJU8.141e-1388.891-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO1_ORYSI1.063e-1288.571-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_PERAE1.389e-1283.331-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_ORYSJ1.814e-1285.711-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_MUSAC1.535e-1182.861-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06054F06 RindPdigS Citrus sinensis cDNA clone N17A04, mRNA sequence.