GR312966

Overview
NameGR312966
Unique NameGR312966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2330 contig Csv1_Contig2330:690..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.878e-33
Identity = 67/132 (50.76%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            TS  K+ EA+  LG D F+VS+DP +++AA+GT+D IIDTVSA H + P                P+KPL++P+F L+  RR + GS IGG+KETQEM+DF AK+NI AD+E++ +D INTA++RL KSD K
Sbjct:  215 TSLSKKEEAMQHLGVDEFVVSTDPQQMQAAVGTLDGIIDTVSAPHPIVPLLSLLKPHGKLIVVGLPDKPLQLPVFPLIQGRRTIAGSGIGGLKETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVK 346          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.823e-32
Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 SPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            S  K  EA+ KLGAD+FL++SD  ++K A  ++D IIDTV   H LAP                PEKP E+P+F+L+  R+L+GG+  GG+KETQEMLDF AKHNI AD+E++ MD +NTA+ERL KSD +
Sbjct:  216 SESKRKEALEKLGADSFLLNSDQEQMKGARSSLDGIIDTVPVNHPLAPLFDLLKPNGKLVMVGAPEKPFELPVFSLLKGRKLLGGTINGGIKETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVR 346          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.434e-30
Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    7 PKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            P K+ EAI  LGAD+FLVS DP +++A   T+D IIDTVSA HS+ P                 EKPLE+P F L+  R+LVGG+ +GG+KETQEM+DF  KHN+  +IE+V MD +N A++RLAK+D K
Sbjct:  219 PTKKEEAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADHSIVPLIGLLKSHGKLVLIGAIEKPLELPPFPLILGRKLVGGTLVGGLKETQEMIDFSPKHNVKPEIEVVPMDYVNIAMQRLAKADVK 348          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.873e-30
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            TSP K  EA+ +LGAD F+VS++ +++KAAMGTM  II+T SA  S+                  PEKPL++P FALVG  +++ GS +G + ETQEM+DF A+H +AADIEL+  D++NTA+ERLAK D +
Sbjct:  234 TSPVKRQEALERLGADGFIVSTNASEMKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVR 365          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.873e-30
Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   13 KESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            K  +A+  LGAD FLVS+D  ++KAAMGTMD IIDTVSA HS++P                 EKP ++  F+L+  R+ + GS IGGM+ETQEM+DF A+H I A+IE++ MD +NTA++RLAK D +
Sbjct:  220 KSKDALDTLGADGFLVSTDEDQMKAAMGTMDGIIDTVSASHSISPLIGLLKSNGKLVLLGATEKPFDISAFSLILGRKSIAGSGIGGMQETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRLAKGDVR 347          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            TSP KE EA   L AD F+VS+D  +++A   ++DYIIDTV+A HSL P                PEKP+E+P F L+  +R V GS  GGMKETQEM+D C +HNI  DIE+V  D+IN A+ RLA++D +
Sbjct:  216 TSPAKEREARENLKADNFVVSTDQKQMQAMTRSLDYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVR 347          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.214e-29
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            +SP K+ EA+ +LGADAF+VSS   +++AA  TMD +I+TVSA   +AP                PE PLEVP F+LV   R + GSNIGGM +TQEM++  AKH + ADIE++  D +NTA+ERLAK+D +
Sbjct:  218 SSPGKKREALERLGADAFVVSSSAEEMEAARSTMDGVINTVSANTPMAPYLALLKPNGKMILVGLPENPLEVPPFSLVHGNRTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVR 349          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.533e-29
Identity = 62/132 (46.97%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            TSP KE+EA+ +LGADAFL+S++  ++KAA GTMD IIDTVSAVH L P                P KP+++ ++ L    + V GS IGGM++TQEM+DF  +H +AA++E++ M+ +N A+ERL K D +
Sbjct:  216 TSPWKEAEAVERLGADAFLLSTNAEQMKAAAGTMDGIIDTVSAVHDLTPLITLLRTHGQLVPVGSPGKPVQLALYPLQSDGKSVAGSMIGGMRDTQEMVDFAVEHGVAAEVEVIGMEDVNGAMERLQKGDVR 347          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.306e-27
Identity = 63/132 (47.73%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            +SP K  EA+ +LGADAF+VS +  ++ AA GTMD II+TVSA   +AP                PEKP+E+P FALV + + + GS IGGM +T EM+D  AKH + A+IE++  D +NTA+ERLAK+D +
Sbjct:  208 SSPGKRQEALERLGADAFVVSKNADEMNAATGTMDGIINTVSANIPIAPLLGLLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVR 338          
BLAST of GR312966 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.620e-27
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDAK 396
            TSP K  EA+  LGAD FLVS D  ++ AA GTMD I++TVSA H +AP                P +PLE+P +A+V   + + G+ +GG+++ Q MLDF  +H I A++E+++MD +NTA+ERL K+D +
Sbjct:  285 TSPGKRREALEHLGADEFLVSRDAGQMAAAAGTMDGILNTVSAWHPVAPLFALMKPMAQMVFVGAPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVR 416          
The following BLAST results are available for this feature:
BLAST of GR312966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GEDH1_OCIBA6.878e-3350.76Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
MTDH_APIGR5.823e-3251.15Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
MTDH3_STYHU1.434e-3051.54Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH7_ORYSJ1.873e-3049.24Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH6_ARATH1.873e-3050.00Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH6_ORYSJ7.118e-3049.24Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH3_ORYSJ1.214e-2949.24Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH9_ORYSJ3.533e-2946.97Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH5_ORYSJ3.306e-2747.73Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CAD8B_ORYSJ9.620e-2743.94Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC06054E11 RindPdigS Citrus sinensis cDNA clone N12F12, mRNA sequence.