GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 44/136 (32.35%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVTF 432
            +T D+  FK +++G+ GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+       ++VTF
Sbjct:    3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD----PEREVTF 133          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 396
            +T D+  FK +++GN GTGK+  + + +  +F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 396
            +T D+  FK +++GN GTGK+  + + +  +F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 396
            FKLV+VG+   GKT  V+R  TG F  +   TIGV+           +++   WDTAGQE+F  +   YY     AI+ +D++ R T+ +VP W  D+ +    NI  +L GNK D+
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDL 133          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 396
            FKLV+VG+   GKT  V+R  TG F  +   TIGV+           +++   WDTAGQE+F  +   YY     AI+ +D++ R T+ +VP W  D+ +    NI  +L GNK D+
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDL 133          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   13 ALPSQ--QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV 411
            A P Q  Q  DY  FKL+I+GN   GKT+F+ R+    F   +  T+G++      F    +++   WDTAGQE++  +   YY      I+M+D+T   ++ +V  W   +     EN  +VL GNK D+ + +V
Sbjct:   10 ATPGQPDQNFDY-MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERV 144          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   22 SQQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ 423
            S Q  DY  FK++I+GN   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V + +
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 148          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   22 SQQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ 423
            S Q  DY  FK++I+GN   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V + +
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 148          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   22 SQQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ 423
            S Q  DY  FK++I+GN   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V + +
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 148          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   22 SQQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ 423
            S Q  DY  FK++I+GN   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V + +
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 148          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4B_CANFA1.279e-1532.35Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB4A_RAT1.279e-1534.68Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN1.279e-1534.68Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB43_RAT1.279e-1537.61Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE1.279e-1537.61Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB3_CAEEL1.279e-1533.09Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3A_RAT1.279e-1530.37Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG1.279e-1530.37Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE1.279e-1530.37Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA1.279e-1530.37Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.