GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK DV +++  +K+
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK DV +++  +K+
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK DV +++  +K+
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK DV +++  +K+
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK DV +++  +K+
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 34/122 (27.87%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV 411
            K++++G+ G GKT F+ +   G F    +  T+G++        +  +++   WDTAGQE+F  +   YY   Q  ++++D+T + ++ N+  W  ++    + ++ I+L GNK DV + +V
Sbjct:   31 KVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERV 152          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 426
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +   +++
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLRNDESTKREL 131          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +     G F + Y PT+  E +  D   +   I    WDTAGQE +  LR   Y      +I F V A  +  NV   W  ++   C N+PI+L G KVD++N
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRN 124          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHO2_SCHPO (GTP-binding protein rho2 OS=Schizosaccharomyces pombe GN=rho2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 447
            KLV+VG+G  GKT+ +     G F  +Y PT+  E +  D   +   ++   WDTAGQE++  LR   Y      ++ F + +  + +NV T W  ++  +C N+P +L G K D+++  V  +++   R++N
Sbjct:   10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTV-FENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPVAIEEM---RRRN 138          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_MOUSE1.324e-1228.57Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA1.324e-1228.57Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN1.324e-1228.57Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA1.324e-1228.57Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN1.324e-1228.57Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB37_MOUSE1.324e-1227.87Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RHO_APLCA1.729e-1231.75Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]
RHO5_SCHPO1.729e-1238.14GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RHO2_SCHPO1.729e-1230.83GTP-binding protein rho2 OS=Schizosaccharomyces po... [more]
RHO1_DROME1.729e-1234.75Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.