GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW----DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN 402
            +KLV++G GG GK+    + +   F ++Y+PTI        +   C      C     DTAGQ+ +  +RD Y   GQ  + ++DVT+R +++ +      + RV +N  +PIVL GNK D++N
Sbjct:    7 YKLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIEDS-----YRRQCQVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLEN 125          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLV++G+G  GKT  +  +    F + Y PT+  + + ++       I    WDTAGQE++  LR   Y +    +I F +T  ++++NV T W+ ++   C  +P +L G K+D ++
Sbjct:    8 KLVVIGDGAVGKTCLLISYANNRFPEDYIPTV-FDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRD 124          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 38/129 (29.46%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQV 426
            KL+IVG  G GKT+ + +++   F ++Y+ T+G  +       +   ++   WDT GQE+F  +   +Y      I+ FDVT   +++ +  W  D L ++    ++ P+V+ GNK+D+++R+V  + V
Sbjct:   10 KLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVV 138          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVK 399
            FK++++G  G GKT+ +KR++   F + Y  TIGV+  +  L++ +    +R   WD AGQE+FG +   YY     A ++FD++   T+  V  W  DL           IP VL  NK D K
Sbjct:   24 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRT-LVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQK 146          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 35/128 (27.34%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ 423
            +FK+++VG+ G GKT  + R   G F    +  T+G++        +  K++   WDTAGQE+F  +   YY      ++++D+T + ++ N+  W  ++     +++ ++L GNKVD    +V  ++
Sbjct:   64 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKRE 191          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: LET60_CAEEL (Ras protein let-60 OS=Caenorhabditis elegans GN=let-60 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 40/129 (31.01%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT 429
            +KLV+VG+GG GK+    + +   F ++Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V    +++NV  +   + RV   +++P+VL GNK D+ +R V  + V+
Sbjct:    4 YKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRRVKDSDDVPMVLVGNKCDLSSRSVDFRTVS 131          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 38/127 (29.92%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 423
            +KLV++G+ G GK+    + + G F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K+
Sbjct:    4 YKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIE-DSYREQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKE 129          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOA_PONAB (Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOA_MOUSE (Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASB_DICDI1.729e-1233.06Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RACC_DICDI1.729e-1230.51Rho-related protein racC OS=Dictyostelium discoide... [more]
RAB7B_MOUSE1.729e-1229.46Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB32_MOUSE1.729e-1234.68Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RAB26_RAT1.729e-1227.34Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
LET60_CAEEL1.729e-1231.01Ras protein let-60 OS=Caenorhabditis elegans GN=le... [more]
RP1BL_HUMAN2.258e-1229.92Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RHOA_RAT2.258e-1233.90Transforming protein RhoA OS=Rattus norvegicus GN=... [more]
RHOA_PONAB2.258e-1233.90Transforming protein RhoA OS=Pongo abelii GN=RHOA ... [more]
RHOA_MOUSE2.258e-1233.90Transforming protein RhoA OS=Mus musculus GN=Rhoa ... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.