GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOA_HUMAN (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOA_CANFA (Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOA_BOVIN (Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            K+VI+G+G  GKT+ +     G F K YEPT+  E +  D F +   I    WDTAGQE+F  LR   Y      ++ F V +R + +NV   W  ++   CE + +VL   K D+++
Sbjct:   17 KIVILGDGACGKTSLLNVFTRGYFPKVYEPTV-FENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRS 133          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 37/132 (28.03%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGNKVDVKNRQVKAKQV 426
            KL+++G+   GKT+ + R +  +F ++Y+ TIG +     F+ N        WDTAGQEK+  L   ++      I++FD++   +++N+  W++       N       +PI+L  NK D   R V   ++
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPILLLANKSDSLTRAVDQSEI 142          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVK-NRQVK 414
            +KLV+VG GG GK+    + +   F  +Y+PTI            EV  LD             DTAGQE++G +R+ Y   G+  ++++ +T+R +++ V T+H+ + RV +    P+V+  NK D++  RQV+
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDEEVALLDVL-----------DTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQ 133          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RASEF_XENTR (RAS and EF-hand domain-containing protein OS=Xenopus tropicalis GN=rasef PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQ 423
            ++K+V+ G+   GK++F+ R    EF      T+GV+        +        WDTAGQE+F  +   Y+      ++++DVT   ++ NV  W  D+      E IPI++ GNK D+  RQ+ A+Q
Sbjct:  522 AYKIVLAGDAAVGKSSFLMRLCKNEFRGNTSATLGVDFQMKTLVVDGEPTILQLWDTAGQERFRSIAKSYFRRADGVLLLYDVTCEKSFLNVREW-IDMIEDATSEAIPIMMVGNKADL--RQLMAEQ 646          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 38/128 (29.69%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV 426
            +K+V++G+GG GK+    + +   F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ  ++++ +TA+ T+ ++      + RV   +++P+VL GNK D++  +V  K++
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEL 130          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK DV +++  +K+
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKE 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 38/124 (30.65%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQV 411
            KL+IVG  G GKT+ + +++   F ++Y+ T+G  +           ++   WDT GQE+F  +   +Y      I+ FDVT   +++ +  W  D L ++    ++ P+VL GNK+D+ +R+V
Sbjct:   10 KLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLADRKV 133          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOA_HUMAN2.258e-1233.90Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
RHOA_CANFA2.258e-1233.90Transforming protein RhoA OS=Canis familiaris GN=R... [more]
RHOA_BOVIN2.258e-1233.90Transforming protein RhoA OS=Bos taurus GN=RHOA PE... [more]
RHO3_ASHGO2.258e-1235.59GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RB32D_DICDI2.258e-1228.03Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RAS_CRYNE2.258e-1231.85Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RASEF_XENTR2.258e-1231.25RAS and EF-hand domain-containing protein OS=Xenop... [more]
RAS3_DROME2.258e-1229.69Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAB8A_PONAB2.258e-1228.57Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB7B_HUMAN2.258e-1230.65Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.