GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB33_CAEEL (Ras-related protein Rab-33 OS=Caenorhabditis elegans GN=rab-33 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 1
Query:   10 MALPSQQTVDYP---SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--------NIPIVLCGNKVDVK 399
            MAL    T  Y    +FK++IVGN   GKT    R   G F +  E TIGV+            +R   WDTAGQE++   +   YY +    + ++DVT R ++ ++  W ++    CE         +P +L GNK DV+
Sbjct:   85 MALAPSSTKTYKQKRTFKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENELLRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKE----CEKHGLVGDSEVPRILIGNKCDVE 222          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 37/126 (29.37%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKNRQVK 414
            +FK+++VG+ G GKT  + R   G F    +  T+G++        +  K++   WDTAGQE+F  +   YY      ++++D+T + ++ N+  W  ++     +++ ++L GNKVD  ++R VK
Sbjct:   67 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVK 192          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 402
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 39/127 (30.71%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQV 411
            ++K+V++G  GTGKT+   R + G+F + Y+PTI  +++     TN G+ I     DT+G E++  +RD Y  + Q  ++++ +T+R++   +      +C+V       IP+V+ GNK D+++ +V
Sbjct:    3 TYKVVVLGASGTGKTSLTVRFVNGDFVETYDPTI-EDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRV 128          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RACF1_DICDI (Rho-related protein racF1 OS=Dictyostelium discoideum GN=racF1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 40/137 (29.20%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 453
            + K V+VG+G  GKT  +  + T  F  +Y PT+  + +  +            WDTAGQE +  LR   Y H    +I F + ++ +++NV T W +++      +PI+L G K D++N     K++   ++KN++
Sbjct:    3 NIKCVVVGDGAVGKTCMLISYTTNGFPSEYIPTV-FDNYCANLMLEGKPYSLGLWDTAGQEDYDRLRPLSYPHTDVFLICFSIISQASFENVTTKWFKEVNHHAPGVPIILVGTKQDIRNDNDSIKKL---KEKNIE 135          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RABZ_DICDI (Ras-related protein RabZ OS=Dictyostelium discoideum GN=rabZ PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 36/123 (29.27%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPT-IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV 411
            + ++++G+  TGK++ ++R    +FE  ++P+ I ++           KI   C+DTAGQEKF  L   YY      ++ +D+  + T+ NV  W  ++ R+   N+PI++  NK D+  ++V
Sbjct:   51 YTIILIGDQATGKSSVLQRFKNNQFEVCHKPSPIIIDCFTKKIQIEGKKISLKCYDTAGQEKFRALSQSYYRCADGIMLFYDIANQKTFDNVGRWLEEVHRLAGPNVPILIIANKCDLNEKRV 173          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 37/122 (30.33%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV 411
            FK + VG+ G GK++ + R     F + Y  TIGV+      +     I+   WDTAGQE+F    +  Y      ++++DVT + +++NV  W +++ R   +N+  ++ GNK D+ +++V
Sbjct:    9 FKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKV 130          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIG-------VEVHPLDFF-TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDV 396
            FKLV++G+   GK++ V R +   F++  E TIG       + +HP D   T    I+F  WDTAGQE++  L   YY +   A++++D+T   + +    W  +L      +++ I L GNKVD+
Sbjct:    4 FKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDL 129          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOC_EMENI (GTP-binding protein rhoC OS=Emericella nidulans GN=rhoC PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 408
            S K V+VG+GG GKT  +  +  G F +KY PT+             GK +    WDTAGQE++  LR   Y       + F +    + +NV   W+ ++   C   PI+L G K D++N++
Sbjct:   69 SKKFVVVGDGGCGKTCLLISYSQGYFPEKYVPTVFENYITQTLHRRSGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAIDCPASLENVMDKWYPEVLHFCPTTPIILVGLKSDLRNKR 191          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 39/126 (30.95%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   28 QTVDYPSF-KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK 399
            +T++Y    K+V++G+ G GK+  + R+   EF      TIGVE        +   I+   WDTAGQEK+  + + YY     A+I++++  R ++ N+  W +       ++  I+L GNK D+K
Sbjct:    4 KTIEYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLK 129          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB33_CAEEL2.258e-1232.39Ras-related protein Rab-33 OS=Caenorhabditis elega... [more]
RAB26_MOUSE2.258e-1229.37Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RHOC_CHICK2.949e-1233.90Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RAPC_DICDI2.949e-1230.71Ras-related protein rapC OS=Dictyostelium discoide... [more]
RACF1_DICDI2.949e-1229.20Rho-related protein racF1 OS=Dictyostelium discoid... [more]
RABZ_DICDI2.949e-1229.27Ras-related protein RabZ OS=Dictyostelium discoide... [more]
RABA_DICDI2.949e-1230.33Ras-related protein RabA OS=Dictyostelium discoide... [more]
YPT52_YEAST3.851e-1233.33GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
RHOC_EMENI3.851e-1232.52GTP-binding protein rhoC OS=Emericella nidulans GN... [more]
RB11B_DICDI3.851e-1230.95Ras-related protein Rab-11B OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.