GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 40/134 (29.85%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++      ++  ++ GNK D  + RQV  +Q
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQ 135          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 44/138 (31.88%), Postives = 65/138 (47.10%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 450
            K+VI+G    GKT+ ++R++   F    +PTIGV+        +   +    WDT+GQE+F  L   YY      I++FDVT   T  ++  W  D     E       P ++ GNK+D  NR V  K      K N+
Sbjct:    9 KVVIIGEKSVGKTSILRRYVDKRFVT-LKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPNRVVTEKAAIQWCKDNI 141          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVK 399
            FK++++G  G GKT+ +KR++   F + Y  TIGV+  +  L++ +    +R   WD AGQE+FG +   YY     A+++FD++    ++ V  W  DL           IP VL  NK D K
Sbjct:   28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRT-LVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQK 150          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RASEF_MOUSE (RAS and EF-hand domain-containing protein homolog OS=Mus musculus GN=Rasef PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 36/121 (29.75%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 402
            ++K+V+ G+   GK++F+ R    EF+     T+GV+        +  +     WDTAGQE+F  +   Y+      ++++DVT   ++ NV  W  D+        IPI+L GNK D+++
Sbjct:  428 AYKIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLIVDGEQTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNVREW-VDMVEDGTHRTIPIMLVGNKADLRD 547          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 38/133 (28.57%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   28 QTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 423
            +T DY  FKL+++G+ G GKT  + R     F   +  TIG++        +  KI+   WDTAGQE+F  +   YY      + ++D+T   ++ N+  W R++      ++  ++ GNK D+  ++  +K+
Sbjct:    3 KTYDY-LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKE 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 1
Query:    4 QLMALPSQQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVTFHRKK 444
            Q  A PSQ  V    FKLV++G+G  GK++   R++  +F K   PT+G              ++   WDTAGQEK+  +   Y+     A++++D+T + ++     W +DL        + ++L GNK D+     + ++VTF   K
Sbjct:    9 QPRAAPSQPRV----FKLVLLGSGSVGKSSLALRYVKNDF-KSILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLS----QEREVTFQEGK 148          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHO4_SCHPO (GTP-binding protein rho4 OS=Schizosaccharomyces pombe GN=rho4 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVE-VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 399
            S KLV+VG+GG GKT  +    +G F ++Y PT+    +  + +  N   I    WDTAGQE++  LR   Y +    ++ F +    +  NV   W+ ++   C   PIVL G K D++
Sbjct:   14 SKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLR 133          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK-NRQV 411
            +KLV+VG GG GK+    + +   F  +Y+PTI            EV  LD             DTAGQE++G +R+ Y   G+  ++++ +T+R +++ + T+H+ + RV   +  P+V+  NK D++  RQV
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVL-----------DTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQV 133          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 38/127 (29.92%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKNRQVKAKQ 423
            +KLV+VG GG GK+    + +   F  +Y+PTI  E +      +         DTAGQE++  +R+ Y   G+  ++++ +T+R +++ + T+ + + RV +    PI++ GNK D+   +V +KQ
Sbjct:    9 YKLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIE-ESYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQ 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 40/122 (32.79%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV 411
            FK V+ G+ G GKT+ + R +T +   +   TIG+E      +     I+   WDTAG+++F  + + +Y      II++DVT + +++NVP+W  D+ R   EN+  ++ GNK D+ +++V
Sbjct:    9 FKFVLAGDSGVGKTSILFR-ITDDTFTETHITIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKV 128          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CHICK3.851e-1229.85Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB7B_DICDI3.851e-1231.88Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAB32_PIG3.851e-1233.87Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RASEF_MOUSE5.030e-1229.75RAS and EF-hand domain-containing protein homolog ... [more]
RAB8_DISOM5.030e-1228.57Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB17_HUMAN5.030e-1229.53Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RHO4_SCHPO6.569e-1233.33GTP-binding protein rho4 OS=Schizosaccharomyces po... [more]
RAS_LENED6.569e-1231.34Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAS_LACBI6.569e-1229.92Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RABF1_DICDI6.569e-1232.79Ras-related protein RabF1 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.