GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 38/137 (27.74%), Postives = 73/137 (53.28%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 450
            +K+++VG  G GK++ + R     F + + PT+GV+  V  +        ++   WDTAGQE+F  +   +Y      I+++DVT   +++    W  D+ +  ++ + I+L GNK D+    V  ++VTF + + +
Sbjct:    7 YKIILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDM----VAQRKVTFEQGQEM 139          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 33/122 (27.05%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV 411
            K++++G+ G GKT F+ +   G F    +  T+G++        +  +++   WDTAGQE+F  +   YY   Q  ++++D+T + ++ N+  W  ++    + ++ I+L GNK D+ + +V
Sbjct:   31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERV 152          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAK 420
            K+ ++G+ G GK++ V R +   F+    PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 131          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAK 420
            K+ ++G+ G GK++ V R +   F+    PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 131          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 37/126 (29.37%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVD-VKNRQVK 414
            +FK+++VG+ G GKT  + R   G F    +  T+G++        +  K++   WDTAGQE+F  +   YY      ++++DVT + ++ ++  W  ++     +++ ++L GNKVD  + R VK
Sbjct:   63 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVK 188          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQV 411
            FKL+++G+   GK+ F+ R     +   Y  TIGV+            ++   WDTAGQE+F  +   YY      II++D+T   ++ NV  W  ++ R   +++  +L GNK D+ +NR V
Sbjct:    9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAV 131          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ 423
            ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEE 141          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ 423
            ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEE 141          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 423
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+    VK +Q
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQ 129          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 423
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+    VK +Q
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQ 129          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABC_DICDI6.569e-1227.74Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB37_HUMAN6.569e-1227.05Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB31_RAT6.569e-1233.85Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE6.569e-1233.85Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB26_BOVIN6.569e-1229.37Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
YPTM1_MAIZE8.579e-1231.71GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RRAS2_MOUSE8.579e-1232.03Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]
RRAS2_HUMAN8.579e-1232.03Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RAS1_DROPS8.579e-1231.50Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE8.579e-1231.50Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.